Commit 4eab820f authored by Paul McCarthy's avatar Paul McCarthy 🚵
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MNT: update datafield/encoding tables from showcase

parent e2f12cb5
......@@ -18,7 +18,7 @@ encoding_id title availability coded_as structure num_members descript
16 PM choices 0 11 1 5 Colour/shape choices for Prospective Memory test
17 Use of Next button in touchscreen hearing test 0 11 1 1 desc
18 Prospective memory grouping 0 11 1 3 Describes when participants achieved correct answer
19 ICD10 0 41 2 19154 ICD10 - WHO International Classification of Diseases<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.
19 ICD10 0 41 2 19155 ICD10 - WHO International Classification of Diseases<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.
20 ACE-coding20 0 11 1 2 Artificial coding, generated after data collection
21 Yes No or Unknown 0 11 1 3 Artificial coding, generated after data collection
22 ACE-coding22 0 11 1 3 Artificial coding, generated after data collection
......@@ -76,7 +76,7 @@ encoding_id title availability coded_as structure num_members descript
100 Pass/Fail test result 0 11 1 2 Results of a pass/fail test
101 Result of a pass/fail/not-tested test 0 11 1 3 Results of a pass/fail test with individuals who were explicitly not-tested indicated.
102 inclusion status 0 11 1 2 Whether a participant was included in a particular subset
123 UK Biobank staff 0 11 1 1128 This is a pseudonymised index of the UK Biobank staff who have had authority to sign-off individual-level records which are included in the UK Biobank core repository. UK Biobank will not publish or reveal the actual identiites of staff.
123 UK Biobank staff 0 11 1 1155 This is a pseudonymised index of the UK Biobank staff who have had authority to sign-off individual-level records which are included in the UK Biobank core repository. UK Biobank will not publish or reveal the actual identiites of staff.
165 Assay correction level 0 11 1 3 Indicates the type of assay correct that was applied to a biochemistry result.
169 Blood haplotypes 0 41 1 6 Blood haplotypes
170 Map co-ordinates 0 11 1 1 Special map co-ordinates
......@@ -94,8 +94,8 @@ encoding_id title availability coded_as structure num_members descript
207 HES coding for OPERSTAT 0 11 1 3 HES coding for OPERSTAT
208 HES coding for CLASSPAT 0 41 1 7 HES coding for CLASSPAT<p>It is included as part of ~C266~.
209 HES coding for INTMANAG 0 41 1 7 HES coding for INTMANAG<p>It is included as part of ~C271~.
210 HES coding for MAINSPEF 0 41 1 88 HES coding for MAINSPEF<p>It is included as part of ~C270~.
211 HES coding for TRETSPEF 0 41 1 177 HES coding for TRETSPEF<p>It is included as part of ~C269~.
210 HES coding for MAINSPEF 0 41 1 91 HES coding for MAINSPEF<p>It is included as part of ~C270~.
211 HES coding for TRETSPEF 0 41 1 201 HES coding for TRETSPEF<p>It is included as part of ~C269~.
212 HES coding for DELPREAN and DELPOSAN 0 11 1 9 HES coding for DELPREAN and DELPOSAN
213 HES coding for BIRORDR 0 41 1 10 HES coding for BIRORDR
214 HES coding for BIRWEIT 0 11 1 2 HES coding for BIRWEIT
......@@ -151,11 +151,11 @@ encoding_id title availability coded_as structure num_members descript
266 Unified recoding for CLASSPAT 0 11 2 13 Created by amalgamating members of ~C208~, ~C245~, ~C246~ and ~C254~.
267 Unified recoding for DISDEST 0 11 2 51 Created by amalgamating members of ~C205~, ~C247~ and ~C255~.
268 Unified recoding for DISMETH 0 11 2 19 Created by amalgamating members of ~C206~, ~C248~, ~C249~ and ~C256~.
269 Unified recoding for TRETSPEF 0 11 1 199 Created by amalgamating members of ~C211~, ~C250~, ~C251~ and ~C257~.
270 Unified recoding for MAINSPEF 0 11 1 94 Created by amalgamating members of ~C210~ and ~C258~.
269 Unified recoding for TRETSPEF 0 11 1 203 Created by amalgamating members of ~C211~, ~C250~, ~C251~ and ~C257~.
270 Unified recoding for MAINSPEF 0 11 1 95 Created by amalgamating members of ~C210~ and ~C258~.
271 Unified recoding for INTMANAG 0 11 1 7 Created by amalgamating members of ~C209~ and ~C260~.
272 Outcome date flags 0 51 1 1 Special date values used to indicate imprecise or unknown data
300 Source of outcome report 0 11 1 3 Details the sources of data used to create adjudicated health outcomes.
272 Outcome date flags 0 51 1 2 Special date values used to indicate imprecise or unknown data
300 Source of outcome report 0 11 1 7 Details the sources of data used to create adjudicated health outcomes.
305 Reason for assay correction level 0 11 1 5 Records the reason that a particular correction level was applied to an aliquot measurement.
339 Degree bothered 0 11 1 4 Degree of botheredness
400 Abdominal MRI image quality 0 11 1 9 Abdominal MRI image quality indicator
......@@ -180,7 +180,7 @@ encoding_id title availability coded_as structure num_members descript
497 Job occupation groupings used for online work questionnaire 0 11 2 995 Participants were asked to self-code their job by making successive choices from this three-level tree.
498 Completion status 0 11 1 3 Whether a test was completed by a participant or abandoned part-way through.
499 Position within pattern 0 11 1 8 This field indicates the position of a particular symbol within the pattern displayed
500 Pattern dictionary used for symbol digit test 0 11 1 33 The symbol digit test contained 33 distinct orderings which could be presented to participants. This coding shows the pattern presented so that (e.g.) if ~F20198~ has the value 7 then the order of the symbols shown would have been [1,4,5,6,0,7,2,3].
500 Pattern dictionary used for symbol digit test 0 11 1 34 The symbol digit test contained 33 distinct orderings which could be presented to participants. This coding shows the pattern presented so that (e.g.) if ~F20198~ has the value 7 then the order of the symbols shown would have been [1,4,5,6,0,7,2,3].
502 TAF answer-set 502 0 11 1 4 Multiple choice answers from Thoughts and Feelings questionnaire
503 TAF answer-set 503 0 11 1 3 Multiple choice answers from Thoughts and Feelings questionnaire
504 TAF answer-set 504 0 11 1 5 Multiple choice answers from Thoughts and Feelings questionnaire
......@@ -231,17 +231,20 @@ encoding_id title availability coded_as structure num_members descript
573 TAF answer-set 573 0 11 1 7 Multiple choice answers from Thoughts and Feelings questionnaire
584 Prefer not to answer 0 11 1 1 Prefer not to answer scalar question
586 Special undetermined dates 0 51 1 3 Used to indicate uncertainty in dates when work given up.
603 COVID-19 antibody study result 0 11 1 3 The results from the self-administered lateral flow devices for detecting COVID-19 antibodies.
609 Mapping of self-reported medical conditions to 3-character ICD10 0 11 1 334 Mapping of self-reported medical conditions to 3-character ICD10
616 Happiness level 0 11 1 12 Happiness level on 10 point scale
620 Distension 0 11 1 12 Levels of distension
626 GP data provider 0 11 1 4 Data provider for GP information
634 Status with uncertain option 0 11 1 3 Status with uncertain option to allow for cases where situation cannot be resolved on available evidence.
656 Error indicator codes 0 11 1 7 Codes used to indicate different types of error.
682 Kinship level 0 11 1 4 Indicates the level of genetic kinship an individual appears to have to other participants
744 Antibiotics 0 11 1 1025 List used by UKB assessment centre nurses to code antibiotic treatments. This is a subset of ~C4~.
777 Weekday after Monday 0 11 1 7 Day of week, encoded with Monday=0.
778 Brain MRI acquisition protocol 0 11 1 5 As the imaging clinic progressed, particularly during the early pilot stage, the image acquistion protocols were modified to improve the results. This coding is used to flag the version of the protocol used on particular participants.
779 Document status 0 11 1 4 Status of an electronic/paper document resource
782 Reasons for lack of a measurement 0 11 1 8 Reasons for lack of a measurement due to processing or other circumstances.
783 COVID-19 lateral flow device 0 11 1 2 The type of lateral flow test device that was used to detect antibodies against the SARS-CoV spike protein.
800 INFO_T1_unusable 0 11 1 1024 INFO_T1_unusable
801 INFO_T1_imperfect 0 11 1 4 INFO_T1_imperfect
802 INFO_T2_FLAIR_unusable 0 11 1 6 INFO_T2_FLAIR_unusable
......@@ -293,6 +296,7 @@ encoding_id title availability coded_as structure num_members descript
1212 UKB Assessment Centre visit 0 11 1 2 Denotes the assessment centre visit at which a particular item of data was produced.
1313 Masked date for location 0 51 1 1 Used to obscure dates which are near to participant DOB.
1317 Scanner position issues 0 31 1 1 Identifies problems determining position of MRI scannes.
1400 Source of test result 0 11 1 4 Indicates the source of a test result.
1401 Mental health problems 0 11 1 18 List of professionally diagnosed mental health problems
1405 Depression substances 0 11 1 4 Substances taken to potentially alleviate depressive symptoms.
1406 Depression therapies 0 11 1 3 Non-drug therapies aimed at alleviating depressive symptoms
......@@ -305,13 +309,14 @@ encoding_id title availability coded_as structure num_members descript
1506 Spirometry QC 0 11 1 3 Indicates the esimated of quality of spirometry measurement.
1529 Biochemistry aliquot 0 11 1 5 Aliquot used for blood biochemistry analysis.
1543 Levels of myopia 0 11 1 3 Levels of myopia.
1642 Reason date is uncertain 0 51 1 1 Indicates the reason that a precise data cannot be assigned
1834 TRUD mapping of Read2 into 3-character ICD10 0 41 1 22340 TRUD mapping of Read2 into 3-character ICD10<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.<p>Contains information from NHS Digital, licenced under the current version of the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
1835 TRUD mapping of Read3 into 3-character ICD10 0 41 1 33284 TRUD mapping of Read3 into 3-character ICD10<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.<p>Contains information from NHS Digital, licenced under the current version of the Open Government Licence available at www.nationalarchives.gov.uk/doc/open-government-licence/open-government-licence.htm.
1836 Partial mapping of ICD9 to ICD10 at 3-character level 0 41 1 2875 This encoding maps ICD9 (~C87~) codes onto the 3-character level of the ICD10 (~C19~) codes. It is not intended to be exhaustive and cases where the mapping is ambiguous have been omitted.<p>ICD-10 codes, terms and text used by permission of WHO, from: International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (ICD-10). Vols 1-3. Geneva, World Health Organization, 1992-2016.
1853 COVID19 test locations 0 11 1 44 Locations/methods used to generate samples for COVID19 testing.
1853 COVID19 test locations 0 11 1 52 Locations/methods used to generate samples for COVID19 testing.
1854 Test result 0 11 1 2 Result of a binary test
1855 Origin of test sample 0 11 1 2 Indicates where a participant was believed to be (or be doing) when their sample was taken.
1856 COVID19 testing laboratories 0 11 1 175 Laboratories performing tests for COVID19
1856 COVID19 testing laboratories 0 11 1 228 Laboratories performing tests for COVID19
1862 Diagnosis route 0 11 1 6 Method of diagnosis
1965 Lost to follow-up 0 11 1 5 This field indicates the participants for whom it is believed to be impossible to fully complete data collection and the reason for this belief.
1970 Record providence 0 41 1 6 Indicates the provider/origin of Hes data records.
......@@ -322,6 +327,8 @@ encoding_id title availability coded_as structure num_members descript
2302 QC flags 0 11 1 2 QC flags for Nightingale data
2310 QC flags (nightingale) 0 11 1 10 Nightingale QC flags
2360 EMIS clinical value coding 0 31 1 6 Special codes used to redact values associated with EMIS GP clinical codes.<p>Please note that floating-point format appears as scientific notation in the Showcase and obscures small differences between the individual codes. These differences are visible when the encoding is downloaded.
2380 Sequencing provider 0 11 1 4 Sequencing provider for WGS project.
2382 WGS Batch 0 11 1 20 Batch number for WGS sample processing
2730 Onset speed 0 11 1 4 Speed of onset
3002 Headache pain frequency 0 11 1 5 Frequency of pain when headaches were at their worst with option of prefer not to answer
3003 Symptoms severity 0 11 1 5 Severity of symptoms over past week with option of prefer not to answer
......@@ -340,15 +347,15 @@ encoding_id title availability coded_as structure num_members descript
3021 Pain severity 0 11 1 5 Severity of pain or discomfort today
3022 Location of pain during past week 0 11 1 21 Location of pain or terderness during past week with option of prefer not to answer
3175 GP code type 0 11 1 11 Coding system used to classify GP clinical and prescription data
3311 Requesting organisation 0 11 1 16 Organisations responsible for requesting blood tests.
3311 Requesting organisation 0 11 1 17 Organisations responsible for requesting blood tests.
3432 UKB laboratory analysers 0 41 1 4 Analyser machines used at the UK Biobank laboratories.
3500 Welsh COVID19 testing laboratories 0 11 1 19 Welsh laboratories performing tests for COVID19
3501 Welsh COVID19 patient types 0 11 1 18 Descriptions of patient types for Welsh COVID19 testing
3502 Welsh COVID19 person types 0 11 1 80 Description of person tested for COVID19 (e.g. essential worker, inpatient, healthcare worker, education worker). Also provides additional information on whether the individual was asymptomatic or immunocompromised
3503 Welsh COVID19 test locations 0 11 1 9 Locations/methods used to generate samples for Welsh COVID19 testing
3501 Welsh COVID19 patient types 0 11 1 21 Descriptions of patient types for Welsh COVID19 testing
3502 Welsh COVID19 person types 0 11 1 102 Description of person tested for COVID19 (e.g. essential worker, inpatient, healthcare worker, education worker). Also provides additional information on whether the individual was asymptomatic or immunocompromised
3503 Welsh COVID19 test locations 0 11 1 11 Locations/methods used to generate samples for Welsh COVID19 testing
3504 Scottish COVID19 testing laboratories 0 41 1 18 Scottish laboratories performing tests for COVID19
3505 Scottish COVID19 medical facility types 0 11 1 8 Types of Scottish medical facilities performing tests for COVID19
3506 Scottish COVID19 medical facilities 0 41 1 255 Names of Scottish medical facilities performing tests for COVID19
3505 Scottish COVID19 medical facility types 0 11 1 9 Types of Scottish medical facilities performing tests for COVID19
3506 Scottish COVID19 medical facilities 0 41 1 291 Names of Scottish medical facilities performing tests for COVID19
3510 QC flag 0 11 1 10 QC flag for Nightgale data
4214 dm+d special codes 0 41 1 2 Special values used to recode missing dm+d codes
4917 Reportability 0 11 1 5 Reportability of assay results
......@@ -377,6 +384,7 @@ encoding_id title availability coded_as structure num_members descript
6332 Pattern selection 0 11 1 8 This coding indicates the candidated pattern selected from a grid of options. The 0 value is a the top-left.
6361 Symbol digit failure 0 11 1 1 This indicates that a participant did not make any correct matches, either due to entering only incorrect matches or abandoning before making a correct match.
6448 Paired associates for "huge" 0 11 1 5 Paired associates for "huge"
6451 Laboratory performing COVID analysis 0 11 1 2 Identifies the laboratory performing the COVID19 assay.
6459 Paired associates for "happy" 0 11 1 5 Paired associates for "happy"
6470 Paired associates for "tattered" 0 11 1 5 Paired associates for "tattered"
6481 Paired associates for "old" 0 11 1 5 Paired associates for "old"
......@@ -400,9 +408,10 @@ encoding_id title availability coded_as structure num_members descript
7310 Initial infection 0 11 1 7 Infections diagnosed alongside IBS
7618 Antigen QC 0 11 1 2 Description of antigen quality control observation.
7667 Signal to noise ratio exclusion 0 31 1 1 Used to flag the value -99999 as not a valid result
7678 EMIS local script codes 0 41 1 7210 Local codes created by EMIS for use in GP prescription data. Codes that have been redacted are represented by negative values.
7689 EMIS local clinical codes 0 41 1 19614 Local codes created by EMIS for use in GP clinical data. Codes that have been redacted are represented by negative values.
8708 TPP local codes 0 41 1 5747 Codes created by TPP for use in GP clinical data. Redacted sensitive/potentially identifying codes are represented by negative values.
7678 EMIS local script codes 0 41 1 7234 Local codes created by EMIS for use in GP prescription data. Codes that have been redacted are represented by negative values.
7689 EMIS local clinical codes 0 41 1 20573 Local codes created by EMIS for use in GP clinical data. Codes that have been redacted are represented by negative values.
8708 TPP local codes 0 41 1 6038 Codes created by TPP for use in GP clinical data. Redacted sensitive/potentially identifying codes are represented by negative values.
9564 Method of returning results to UK Biobank 0 11 1 3 Identifies the method that participants used to return their test result to UK Biobank.
22000 Genotyping array 0 11 2 108 This encoding categorises the particular types of arrays used to measure genotypes in UK Biobank participants.
100001 WEBDIET-coding100000001 0 11 1 3 Coding for online diet questionnaire
100002 WEBDIET-coding100000002 0 11 1 5 Coding for online diet questionnaire
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