Commits · 27a342b9f3a048009bcb5a31da657ed79e0fdb23 · FSL / funpack

21 Mar, 2019 6 commits
- TEST: version · 27a342b9
  Paul McCarthy authored Mar 21, 2019
  
  27a342b9
- MNT: version · 7d5a6c92
  Paul McCarthy authored Mar 21, 2019
  
  7d5a6c92
- TEST: More tests for genColumnNames · 5769a86f
  Paul McCarthy authored Mar 21, 2019
  
  5769a86f
- TEST: Incomplete vartable was causing failures · be8230e5
  Paul McCarthy authored Mar 21, 2019
  
  be8230e5
- BF: genColumnNames was ignoring processing-generated columns · 3c2ca74c
  Paul McCarthy authored Mar 21, 2019
  
  3c2ca74c
- BF: Not sure what I was thinking there - column pattern defaults to "{name}", · 7cd6d8f3
  Paul McCarthy authored Mar 21, 2019
```
and all renames go through genColumnNames function
```
  7cd6d8f3
19 Mar, 2019 2 commits
- Merge branch 'enh/hierarchy' into 'master' · 8f83fbcc
  Paul McCarthy authored Mar 19, 2019
```
DOC: readme

See merge request fsl/ukbparse!112
```
  8f83fbcc
- DOC: readme · d1308f38
  Paul McCarthy authored Mar 18, 2019 and Paul McCarthy committed Mar 19, 2019
  
  d1308f38
18 Mar, 2019 23 commits
- Merge branch 'enh/hierarchy' into 'master' · 78483cc9
  Paul McCarthy authored Mar 18, 2019
```
Enh/hierarchy

Closes #3

See merge request fsl/ukbparse!111
```
  78483cc9
- TEST: update notebook test · 28bfedc1
  Paul McCarthy authored Mar 18, 2019
  
  28bfedc1
- DOC: Example of flattenHierarchical in demo · fd556440
  Paul McCarthy authored Mar 18, 2019
  
  fd556440
- DOC: changelog · 1466a38b
  Paul McCarthy authored Mar 18, 2019
  
  1466a38b
- TEST: adjust icd10 tests, new tests for hierarchy module · 38638e36
  Paul McCarthy authored Mar 18, 2019
  
  38638e36
- TEST: version · b03dfe4d
  Paul McCarthy authored Mar 18, 2019
  
  b03dfe4d
- MNT: version · beba5489
  Paul McCarthy authored Mar 18, 2019
  
  beba5489
- DOC: changelog · cfa966c3
  Paul McCarthy authored Mar 18, 2019
  
  cfa966c3
- TEST: Unit test for flattenHierarchical · b380e3b8
  Paul McCarthy authored Mar 18, 2019
  
  b380e3b8
- RF: Change semantics - if level is out of bounds, the value is returned unchanged · 1867db7d
  Paul McCarthy authored Mar 18, 2019
  
  1867db7d
- RF: Check for circularity in hierarchies · 1c75398c
  Paul McCarthy authored Mar 18, 2019
  
  1c75398c
- ENH: New flattenHierarchical cleaning function · af1b3166
  Paul McCarthy authored Mar 18, 2019
  
  af1b3166
- ENH: Definitions of all hierarchical variables, acquired legally I assure you · bcbf6490
  Paul McCarthy authored Mar 18, 2019
```
that from the UKBiobank showcase
```
  bcbf6490
- RF: Deprecate parts of icd10.py which are now in hierarchy.py · 2299552e
  Paul McCarthy authored Mar 18, 2019
  
  2299552e
- ENH: New hierarchy module for working with hierarchical variables - copied · 05c44ceb
  Paul McCarthy authored Mar 18, 2019
```
almost verbatim from icd10.py
```
  05c44ceb
- Merge branch 'bf/icd10' into 'master' · 691c6bbb
  Paul McCarthy authored Mar 18, 2019
```
Bf/icd10

See merge request fsl/ukbparse!110
```
  691c6bbb
- TEST: demo notebook outputs · 44d78e2d
  Paul McCarthy authored Mar 18, 2019
  
  44d78e2d
- RF: Cast all data types to integer if possible. · f8db7571
  Paul McCarthy authored Mar 18, 2019
  
  f8db7571
- DOC: changelog · 48779942
  Paul McCarthy authored Mar 18, 2019
  
  48779942
- TEST: version · d44f65c1
  Paul McCarthy authored Mar 18, 2019
  
  d44f65c1
- MNT: version · 6346f7f3
  Paul McCarthy authored Mar 18, 2019
  
  6346f7f3
- BF: Format string can't assume numeric type · 11d11f81
  Paul McCarthy authored Mar 18, 2019
  
  11d11f81
- Merge branch 'rf/rules' into 'master' · 8980a3b0
  Paul McCarthy authored Mar 18, 2019
```
Rf/rules

See merge request fsl/ukbparse!109
```
  8980a3b0
17 Mar, 2019 7 commits
- TEST: update notebook outputs · fcdc2469
  Paul McCarthy authored Mar 17, 2019
  
  fcdc2469
- TEST: version · 166b9324
  Paul McCarthy authored Mar 17, 2019
  
  166b9324
- DOC: Changelog · df801d4a
  Paul McCarthy authored Mar 17, 2019
  
  df801d4a
- MNT: version · 35fbf38f
  Paul McCarthy authored Mar 17, 2019
  
  35fbf38f
- RF: Tweaks to default rules · 69ab47cb
  Paul McCarthy authored Mar 17, 2019
  
  69ab47cb
- RF: Remove default behaviour of clobbering negative values - this is/should be · 4f386579
  Paul McCarthy authored Mar 17, 2019
```
handled by datacoding/variable-specific NA value replacement
```
  4f386579
- BF: Mistake in log message · 4f0d1ba3
  Paul McCarthy authored Mar 17, 2019
  
  4f0d1ba3
16 Mar, 2019 2 commits
- Merge branch 'mnt/version' into 'master' · 7a88e206
  Paul McCarthy authored Mar 16, 2019
```
TEST: version

See merge request fsl/ukbparse!108
```
  7a88e206
- TEST: version · e97823c0
  Paul McCarthy authored Mar 16, 2019
  
  e97823c0