Commits · a43e934a35659954dcb9709cee8705137fe38f30 · FSL / funpack · GitLab

05 Dec, 2019 40 commits
- TEST: notebook is difficult to kill · a43e934a
  Paul McCarthy authored Nov 28, 2019
  
  a43e934a
- DOC: remove lowmem section from demo · fb3f4934
  Paul McCarthy authored Nov 28, 2019
  
  fb3f4934
- DOC: readme · 6788df1f
  Paul McCarthy authored Nov 28, 2019
  
  6788df1f
- RF: Make logging a bit more sensible · ef806005
  Paul McCarthy authored Nov 28, 2019
  
  ef806005
- TEST: test parallel export · efac409f
  Paul McCarthy authored Nov 28, 2019
  
  efac409f
- TEST: Test chunked import · b356d531
  Paul McCarthy authored Nov 27, 2019
  
  b356d531
- MNT: logging · 406238de
  Paul McCarthy authored Nov 27, 2019
  
  406238de
- TEST: test inmainprocess · 23fc808d
  Paul McCarthy authored Nov 27, 2019
  
  23fc808d
- MNT: logging · f5b9f771
  Paul McCarthy authored Nov 27, 2019
  
  f5b9f771
- BF: Sigh. Needed a more robust method of detecting the main process. · 1d294b22
  Paul McCarthy authored Nov 27, 2019
  
  1d294b22
- RF: Factor out column format to separate function, add some docs. · 019f1246
  Paul McCarthy authored Nov 27, 2019
  
  019f1246
- ENH: TV exporter exports chunks in parallel, then cats them afterwards. · 62ea6c79
  Paul McCarthy authored Nov 26, 2019
  
  62ea6c79
- TEST: update test for exporter signature change · a4483ee8
  Paul McCarthy authored Nov 26, 2019
  
  a4483ee8
- RF: Exporter functions now accept a dict of oldcol:newcol mappings, instead of · 835dc7fc
  Paul McCarthy authored Nov 26, 2019
```
a sequence of new column names
```
  835dc7fc
- RF: Process results are only saved to disk if using multiprocessing · c10e82c4
  Paul McCarthy authored Nov 26, 2019
  
  c10e82c4
- TEST: Test new util functions · e53f3bd8
  Paul McCarthy authored Nov 26, 2019
  
  e53f3bd8
- RF,ENH: Rename countRows to what it is, and add fallback implementation. Add · bbcc822c
  Paul McCarthy authored Nov 26, 2019
```
cat function.
```
  bbcc822c
- BF: Update colmap when columns are added/removed · 937c9239
  Paul McCarthy authored Nov 26, 2019
  
  937c9239
- MNT: Updates to fmrib categories · d7b7de94
  Paul McCarthy authored Nov 25, 2019
  
  d7b7de94
- RF: New columns are passed back to parent process via disk · c7caa94c
  Paul McCarthy authored Nov 25, 2019
  
  c7caa94c
- RF: Factor out process results parsing · 7c30187f
  Paul McCarthy authored Nov 25, 2019
  
  7c30187f
- MNT: New var which needs float64 · 756e29fd
  Paul McCarthy authored Nov 25, 2019
  
  756e29fd
- RF: Improve metaproc error reporting · b506d97a
  Paul McCarthy authored Nov 25, 2019
  
  b506d97a
- RF: subtable supports slicing by rows as well as columns · 9933bbde
  Paul McCarthy authored Nov 22, 2019
  
  9933bbde
- TEST: update notebook benchmark · b33a6175
  Paul McCarthy authored Nov 22, 2019
  
  b33a6175
- DOC: changelog · ec22bf88
  Paul McCarthy authored Nov 22, 2019
  
  ec22bf88
- TEST: version · 159eb986
  Paul McCarthy authored Nov 22, 2019
  
  159eb986
- ENH: Parallelise removeIfRedundant · 8010e08f
  Paul McCarthy authored Nov 22, 2019
  
  8010e08f
- TEST: adjust test to cover new argument handling · f78f1dc3
  Paul McCarthy authored Nov 22, 2019
  
  f78f1dc3
- ENH: --variable/--exclude/--subject args now accept comma-separated mixtures · 3dbe4e5e
  Paul McCarthy authored Nov 22, 2019
```
of IDs and ranges
```
  3dbe4e5e
- MNT: version · fdf9e6ba
  Paul McCarthy authored Nov 22, 2019
  
  fdf9e6ba
- ENH: icd10 module supports multiprocessing execution environment · 7da3e83b
  Paul McCarthy authored Nov 22, 2019
  
  7da3e83b
- RF: Cleaning and processing functions use DataTable.merge · 7870f190
  Paul McCarthy authored Nov 21, 2019
  
  7870f190
- ENH: New DataTable.merge method, which takes care of merging subtables back in. · b66e7fd8
  Paul McCarthy authored Nov 21, 2019
  
  b66e7fd8
- BF: Bug in cleaning · aa37c11c
  Paul McCarthy authored Nov 19, 2019
  
  aa37c11c
- TEST: Test new independent processing · 7942b822
  Paul McCarthy authored Nov 19, 2019
  
  7942b822
- RF: Parallelise fmrib processing · 3f8d55bb
  Paul McCarthy authored Nov 19, 2019
  
  3f8d55bb
- ENH: Ability to run process independently on s[ecified variables · 0d894980
  Paul McCarthy authored Nov 19, 2019
  
  0d894980
- RF: Copy subtables in processing stage where possible · 853439ed
  Paul McCarthy authored Nov 19, 2019
  
  853439ed
- RF: Adjust processing table so jobs are run in parallel · 0d3f29d2
  Paul McCarthy authored Nov 19, 2019
  
  0d3f29d2