Commits · d74fd3c331aaca0232cb6f2ba10d82d61c8dad61 · FSL / funpack

06 Dec, 2018 7 commits
- MNT: Version · d74fd3c3
  Paul McCarthy authored Dec 06, 2018
  
  d74fd3c3
- ENH: Improved dry run output formatting · 915a5147
  Paul McCarthy authored Dec 06, 2018
  
  915a5147
- MNT: Tweaking sdist/install · 113e5449
  Paul McCarthy authored Dec 06, 2018
  
  113e5449
- MNT: Mock is part of py3 · 3fd70cc9
  Paul McCarthy authored Dec 06, 2018
  
  3fd70cc9
- CI: Auto zenodo deployment · 67e3381f
  Paul McCarthy authored Dec 06, 2018
  
  67e3381f
- CI: Auto pypi deployment · c459161b
  Paul McCarthy authored Dec 06, 2018
  
  c459161b
- MNT,DOC: Clean up readme, make sure pypi sdist gets built nicely. · 59a3d203
  Paul McCarthy authored Dec 06, 2018
  
  59a3d203
04 Dec, 2018 17 commits
- Merge branch 'enh/dryrun' into 'master' · c3a4dfea
  Paul McCarthy authored Dec 04, 2018
```
Enh/dryrun

See merge request fsl/ukbparse!71
```
  c3a4dfea
- STY: Little typos · 7c8d3d87
  Paul McCarthy authored Dec 04, 2018
  
  7c8d3d87
- RF: Revert change to infile/outfile args - infiles are still needed for dryrun · c36b40eb
  Paul McCarthy authored Dec 04, 2018
  
  c36b40eb
- MNT: Version · 295450b7
  Paul McCarthy authored Dec 04, 2018
  
  295450b7
- DOC: Changelog · 49d9ec2d
  Paul McCarthy authored Dec 04, 2018
  
  49d9ec2d
- TEST: Super basic dryrun test · 811f3d2e
  Paul McCarthy authored Dec 04, 2018
  
  811f3d2e
- ENH: main calls dryrun · 42769a48
  Paul McCarthy authored Dec 04, 2018
  
  42769a48
- ENH: new dryrun module · 8d1037af
  Paul McCarthy authored Dec 04, 2018
  
  8d1037af
- ENH: importing.importData accepts a dryrun argument · 9f3f30b3
  Paul McCarthy authored Dec 04, 2018
  
  9f3f30b3
- ENH: merging.mergeDataFrames accepts a dryrun argument · 2297e7b4
  Paul McCarthy authored Dec 04, 2018
  
  2297e7b4
- ENH: New --dry_run option, which will print out a summary of · c65a4d42
  Paul McCarthy authored Dec 04, 2018
```
cleaning/processing. Not yet implemented. Tweak to util.timed.
```
  c65a4d42
- Merge branch 'bf/icd10_nan' into 'master' · 037900e4
  Paul McCarthy authored Dec 04, 2018
```
Bf/icd10 nan

See merge request fsl/ukbparse!70
```
  037900e4
- BF: More ICD10 adjustments - improper use of icd10.storeCodes · ad1ec5a3
  Paul McCarthy authored Dec 04, 2018
  
  ad1ec5a3
- MNT: Version · 0ca07174
  Paul McCarthy authored Dec 04, 2018
  
  0ca07174
- DOC: Changelog · cc11880f
  Paul McCarthy authored Dec 04, 2018
  
  cc11880f
- TEST: Test icd10 export with NaNs · 5418dd3e
  Paul McCarthy authored Dec 04, 2018
  
  5418dd3e
- BF: ICD10 export was not handling NaNs · 86b6337b
  Paul McCarthy authored Dec 04, 2018
  
  86b6337b
09 Oct, 2018 4 commits
- Merge branch 'rf/log_cli_args' into 'master' · f382425c
  Paul McCarthy authored Oct 09, 2018
```
Rf/log cli args

See merge request fsl/ukbparse!69
```
  f382425c
- DOC: Changelog · c5f0d15a
  Paul McCarthy authored Oct 09, 2018
  
  c5f0d15a
- MNT: Version bump · b7bcfa23
  Paul McCarthy authored Oct 09, 2018
  
  b7bcfa23
- RF: Log command line arguments, small change to parseArgs function signature · 8d68d88b
  Paul McCarthy authored Oct 09, 2018
  
  8d68d88b
05 Oct, 2018 12 commits
- Merge branch 'rf/deprecations' into 'master' · 1dc9a1fc
  Paul McCarthy authored Oct 05, 2018
```
Rf/deprecations

See merge request fsl/ukbparse!68
```
  1dc9a1fc
- MNT: version · ae52d6fe
  Paul McCarthy authored Oct 05, 2018
  
  ae52d6fe
- DOC: changelog · b52131d8
  Paul McCarthy authored Oct 05, 2018
  
  b52131d8
- TEST: pandas .ix indexer is deprecated · 8cc55bb1
  Paul McCarthy authored Oct 05, 2018
  
  8cc55bb1
- RF: Use raw strings when constructing regexes · 919906fd
  Paul McCarthy authored Oct 05, 2018
  
  919906fd
- Merge branch 'bf/order' into 'master' · e49ac452
  Paul McCarthy authored Oct 05, 2018
```
Bf/order

See merge request fsl/ukbparse!67
```
  e49ac452
- MNT: Version · 6d4e647f
  Paul McCarthy authored Oct 05, 2018
  
  6d4e647f
- DOC: Changelog · 6a394637
  Paul McCarthy authored Oct 05, 2018
  
  6a394637
- BF: Calling removeColumns mutates the varmap · 0ee47cfe
  Paul McCarthy authored Oct 05, 2018
  
  0ee47cfe
- TEST: Test import_all + specifically requested variable that ends up getting · 41f39d13
  Paul McCarthy authored Oct 05, 2018
```
removed.
```
  41f39d13
- RF: No need to keep ref to column list - they're all in the varmap. · 60a62467
  Paul McCarthy authored Oct 05, 2018
  
  60a62467
- BF: Variables for which all columns had been removed were still sitting in · 2931ad1e
  Paul McCarthy authored Oct 05, 2018
```
internal DataTable.__varmap. main.finaliseColumns makes sure not to pass
non-existent (or removed) variables to DataTable.order method.
```
  2931ad1e