Commits · master · FSL / funpack

28 Jun, 2022 11 commits
- Merge branch 'bf/findconfigdir' into 'master' · 2f28acca
  Paul McCarthy authored Jun 28, 2022
```
BF: need to search multiple config directories

See merge request !98
```
  2f28acca
- TEST: FUNPACK_CONFIG_DIR may not be set · 6114b05d
  Paul McCarthy authored Jun 28, 2022
  
  6114b05d
- MNT: gitlab MR template · 71944ec8
  Paul McCarthy authored Jun 28, 2022
  
  71944ec8
- DOC: changelog · 16ecbf31
  Paul McCarthy authored Jun 28, 2022
  
  16ecbf31
- DOC: version · 49a322fb
  Paul McCarthy authored Jun 28, 2022
  
  49a322fb
- MNT: version · 67be3800
  Paul McCarthy authored Jun 28, 2022
  
  67be3800
- BF: Only return first cfgdir; inverted logic in row mask · 1a404d0b
  Paul McCarthy authored Jun 28, 2022
  
  1a404d0b
- MNT: create both funpack and fmrib_unpack exes when generating notebook · 017d070b
  Paul McCarthy authored Jun 28, 2022
  
  017d070b
- RF: Copy/re-create data freme when filtering by subjects. Avoids pandas copy · b827d58f
  Paul McCarthy authored Jun 28, 2022
```
warning in subsequent operations
```
  b827d58f
- TEST: test findConfigFile/Dirs · 047e5bae
  Paul McCarthy authored Jun 28, 2022
  
  047e5bae
- BF: need to search multiple config directories - new function, findConfigDirs, · 8d7c7ec0
  Paul McCarthy authored Jun 28, 2022
```
which return all candidate directories
```
  8d7c7ec0
27 Jun, 2022 4 commits
- Merge branch 'bf/binarise-categorical' into 'master' · da176971
  Paul McCarthy authored Jun 27, 2022
```
New --add_aux_var option

See merge request !97
```
  da176971
- MNT: refresh showcase metadata · 616cb27e
  Paul McCarthy authored Jun 27, 2022
  
  616cb27e
- DOC: changelog · 8c7adb30
  Paul McCarthy authored Jun 27, 2022
  
  8c7adb30
- DOC: formatting · 91c5ace6
  Paul McCarthy authored Jun 27, 2022
  
  91c5ace6
24 Jun, 2022 11 commits
- DOC: tweaks · 1bdefcb1
  Paul McCarthy authored Jun 24, 2022
  
  1bdefcb1
- MNT: use find_namespace_packages · d75adec2
  Paul McCarthy authored Jun 24, 2022
  
  d75adec2
- DOC: small tweaks · 8fe199dc
  Paul McCarthy authored Jun 24, 2022
  
  8fe199dc
- DOC: changelog, readme · d070047a
  Paul McCarthy authored Jun 24, 2022
  
  d070047a
- DOC: use substitutions instead of modifying source files · c4a6abad
  Paul McCarthy authored Jun 24, 2022
  
  c4a6abad
- TEST: tweak demo test · 30359ec2
  Paul McCarthy authored Jun 24, 2022
  
  30359ec2
- DOC: update demo page · cb1bf811
  Paul McCarthy authored Jun 24, 2022
  
  cb1bf811
- RF: Change cfgdir precedence - site-packages comes first · 10f59f88
  Paul McCarthy authored Jun 24, 2022
  
  10f59f88
- RF: New findConfigDir function, used to find lib/site-packages/funpack/ · 3a3cb431
  Paul McCarthy authored Jun 24, 2022
  
  3a3cb431
- BF: Don't consider directories · 207e76cb
  Paul McCarthy authored Jun 24, 2022
  
  207e76cb
- MNT: loadPluginFile runs path through findPluginFile · 8caadfeb
  Paul McCarthy authored Jun 24, 2022
  
  8caadfeb
23 Jun, 2022 3 commits
- TEST: rework fixPath test · 8a54b4aa
  Paul McCarthy authored Jun 23, 2022
  
  8a54b4aa
- RF: Do all config/table/plugin file lookup using · a34bfb2d
  Paul McCarthy authored Jun 23, 2022
```
add_argument(type=findFile). New FUNPACK_CONFIG_DIR variable to make things
more flexible
```
  a34bfb2d
- DOC: notes on separate config project, preliminary changelog · c1e50148
  Paul McCarthy authored Jun 22, 2022
  
  c1e50148
22 Jun, 2022 7 commits
- MNT: depend on fmrib-config package (not published yet) · 508fd246
  Paul McCarthy authored Jun 22, 2022
  
  508fd246
- MNT: Remove fmrib config - it will be packaged/released separately · 0aecca69
  Paul McCarthy authored Jun 22, 2022
  
  0aecca69
- MNT: utility script to refresh UKB schema · dfc2c88c
  Paul McCarthy authored Jun 22, 2022
  
  dfc2c88c
- MNT; Refresh ukb schema · c45e329c
  Paul McCarthy authored Jun 22, 2022
  
  c45e329c
- MNT: add_aux_vars in fmrib config · b6baf59f
  Paul McCarthy authored Jun 22, 2022
  
  b6baf59f
- MNT: Mark broadcasting for removal · 01322b75
  Paul McCarthy authored Jun 22, 2022
  
  01322b75
- TEST: unit/integration tests for --add_aux_vars · 09cf2c48
  Paul McCarthy authored Jun 22, 2022
  
  09cf2c48
21 Jun, 2022 2 commits
- ENH: implement --add_aux_vars · d2418857
  Paul McCarthy authored Jun 21, 2022
  
  d2418857
- ENH: infra for new --add_aux_vars option · 6146eb8c
  Paul McCarthy authored Jun 21, 2022
  
  6146eb8c
20 Jun, 2022 2 commits
- MNT: fix typing · 5204a6f9
  Paul McCarthy authored Jun 20, 2022
  
  5204a6f9
- DOC: changed mind - minor bump · 0163b7ca
  Paul McCarthy authored Jun 20, 2022
  
  0163b7ca