``ukbparse`` changelog ====================== 0.7.0 ----- Changed ^^^^^^^ * Small refactorings in :mod:`ukbparse.config` so that command line arguments can be logged easily. 0.6.3 ----- Changed ^^^^^^^ * Minor updates to avoid deprecation warnings. 0.6.2 ----- Fixed ^^^^^ * Fixed a bug with the ``--import_all`` option, where an error would be thrown if a specifically requested variable was removed during processing. 0.6.1 ----- Changed ^^^^^^^ * Changed default processing for variables 41202/41204 so they are binarised *within* visit. 0.6.0 ----- Added ^^^^^ * New ``--import_all`` and ``--unknown_vars_file`` options for outputting information about previously unknown variables/columns. Changed ^^^^^^^ * Changed processing function return value interface - see the :mod:`.processing_functions` module for details. 0.5.0 ----- Added ^^^^^ * Ability to export a mapping file containing the numeric values that ICD10 codes have been converted into - see the ``--icd10_map_file`` argument. Changed ^^^^^^^ * Changes to default processing - all ICD10 variables are binarised by default. Sparsity/redundancy tests happen at the end, so that columns generated by previous steps are tested. Fixed ^^^^^ * :meth:`.HDFStoreCollection.loc` method returns a ``pandas.DataFrame`` when a list of columns are indexed, and a ``pandas.Series`` when a single column is indexed. 0.4.1 ----- Changed ^^^^^^^ * Updates to variable table for UKBiobank spirometry variables. 0.4.0 ----- Added ^^^^^ * New :func:`.parseSpirometryData` function for parsing spirometry data (i.e. `UKBiobank variable 3066 `_ Removed ^^^^^^^ * Removed the ``--disable_rename`` command line option, because having the columns renamed is really annoying. 0.3.3 ----- Changed ^^^^^^^ * Reverted the behaviour of :func:`.isSparse`. 0.3.2 ----- Changed ^^^^^^^ * Changed the behaviour of :func:`.isSparse` so that series which are *greater than* the ``minpres`` threshold pass, rather than *greater than or equal to*. 0.3.1 ----- Changed ^^^^^^^ * The :func:`.isSparse` function ignores the ``minpres`` argument if it is larger than the number of samples in the data set. Fixed ^^^^^ * The :func:`.binariseCategorical` function now works on data with missing values. 0.3.0 ----- Added ^^^^^ * New :meth:`.DataTable.addColumns` method, so processing functions can now add new columns. * New :func:`.binariseCategorical` processing function, which expands a categorical column into multiple binary columns, one for each unique value in the data. * New :func:`.expandCompound` processing function, which expands a compound column into columns, one for each value in the compound data. * Keyword arguments can now be used when specifying processing. Fixed ^^^^^ * Fixed handling of non-numeric categorical variables 0.2.0 ----- Added ^^^^^ * Added a changelog file Changed ^^^^^^^ * Updated variable/datacoding files to bring them in line with the latest Biobank data release.