From dfba6a065220eae40000d5adda20a5d1c5a9da57 Mon Sep 17 00:00:00 2001
From: Stephen Smith <steve@fmrib.ox.ac.uk>
Date: Sat, 3 May 2003 15:12:49 +0000
Subject: [PATCH] changed mcflirt fsl:exec call
---
melodic.tcl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/melodic.tcl b/melodic.tcl
index 8365e63..5250167 100644
--- a/melodic.tcl
+++ b/melodic.tcl
@@ -506,7 +506,7 @@ if { $fmri(st) > 0 } {
#{{{ motion correction
if { $fmri(mc) != 0 } {
- fsl:exec "${FSLDIR}/bin/mcflirt -in $INPUT -out prefiltered_func_data_mcf -refvol $target_vol_number" C
+ fsl:exec "${FSLDIR}/bin/mcflirt -in $INPUT -out prefiltered_func_data_mcf -refvol $target_vol_number" -r
set INPUT prefiltered_func_data_mcf
}
--
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