diff --git a/bedpost b/bedpost index af8fde384bc2bc1d36e221d4a9f9699ef4083619..6b0292060b0e45b8ec3f34a85d5a1bb29fff1ea5 100755 --- a/bedpost +++ b/bedpost @@ -5,7 +5,15 @@ # SHCOPYRIGHT if [ "x$SGE_ROOT" = "x" ] ; then - . /usr/local/share/sge-6.0/default/common/settings.sh + if [ -f /usr/local/share/sge-6.0/default/common/settings.sh ] ; then + . /usr/local/share/sge-6.0/default/common/settings.sh + else if [ -f /usr/local/sge-6/default/common/settings.sh ] ; then + . /usr/local/sge-6/default/common/settings.sh + else + echo "bedpost: Couldn\'t locate SGE_ROOT\!" + exit 255 + fi + fi fi Usage() { diff --git a/bedpostX b/bedpostX index 5b138c41299f334644a85c88fda3148ae4b9f47c..24cbc514fa11f14abbc6e25ca469aaf535a79520 100755 --- a/bedpostX +++ b/bedpostX @@ -5,12 +5,20 @@ # SHCOPYRIGHT if [ "x$SGE_ROOT" = "x" ] ; then - . /usr/local/share/sge-6.0/default/common/settings.sh + if [ -f /usr/local/share/sge-6.0/default/common/settings.sh ] ; then + . /usr/local/share/sge-6.0/default/common/settings.sh + else if [ -f /usr/local/sge-6/default/common/settings.sh ] ; then + . /usr/local/sge-6/default/common/settings.sh + else + echo "bedpost: Couldn\'t locate SGE_ROOT\!" + exit 255 + fi + fi fi Usage() { echo "" - echo "Usage: bedpost <subject directory> " + echo "Usage: bedpostX <subject directory> " echo "" echo "expects to find bvals and bvecs in subject directory" echo "expects to find data nodif_brain_mask nodif in subject directory" diff --git a/bedpostX_single_slice.sh b/bedpostX_single_slice.sh index 8080f60975364128c64fc7f43b5766f5ae1f27a1..6a87b2682ce730538e660d30e6581df2b1ef7c34 100755 --- a/bedpostX_single_slice.sh +++ b/bedpostX_single_slice.sh @@ -7,7 +7,6 @@ slicezp=`${FSLDIR}/bin/zeropad $slice 4` #$ -cwd -q long.q #$ -S /bin/sh #$ -V -N bedpostX -#$ -l arch=tru64 #$ -m a ${FSLDIR}/bin/xfibres\ diff --git a/bedpost_single_slice.sh b/bedpost_single_slice.sh index 310575dcc008fdbfa8db487ca52464e3589e5a30..a9d27a1e1157fb7106fdea09bb4a728f5301e424 100755 --- a/bedpost_single_slice.sh +++ b/bedpost_single_slice.sh @@ -7,7 +7,6 @@ slicezp=`${FSLDIR}/bin/zeropad $slice 4` #$ -cwd -q long.q #$ -S /bin/sh #$ -V -N bedpost -#$ -l arch=tru64 #$ -m a ${FSLDIR}/bin/diff_pvm\