Release prep

.gitignore

+dist/
+build/
+get_dataset.egg-info/

README.md

@@ -5,20 +5,22 @@ Download entire projects from openneuro.org. All you need is a dataset ID.
 ## Usage
 
 ```
-usage: openneuro_dl [-h] [--savepath SAVEPATH] [--savename SAVENAME] [--w] id
+usage: get_dataset [-h] [--id ID] [--savepath SAVEPATH] [--savename SAVENAME]
+                   [--w] [--service {openneuro}]
 
 download a dataset from openneuro.org
 
-positional arguments:
-  id                   a dataset ID. Openneuro.org provides these in the form
-                       of ds###### (e.g. ds002285)
-
 optional arguments:
-  -h, --help           show this help message and exit
-  --savepath SAVEPATH  the output directory where you would like to download
-                       the dataset (default is the current working directory)
-  --savename SAVENAME  savename is an optional name to give the downloaded
-                       dataset folder. The default is the dataset id.
-  --w                  re-sync existing dataset with the same ID if it already
-                       exists in the savepath
+  -h, --help            show this help message and exit
+  --id ID               a dataset ID. Openneuro.org provides these in the form
+                        of ds###### (e.g. ds002190)
+  --savepath SAVEPATH   the output directory where you would like to download
+                        the dataset (default is the current working directory)
+  --savename SAVENAME   savename is an optional name to give the downloaded
+                        dataset folder. The default is the dataset id.
+  --w                   re-sync existing dataset with the same ID if it
+                        already exists in the savepath
+  --service {openneuro}
+                        set the service provider that you want to download
+                        data from
 ```

condaRecipes/meta.yaml

+{% set data = load_setup_py_data() %}
+package:
+  name: get_dataset
+  version: {{ data['version']}}
+
+build:
+   noarch: python
+   script: python setup.py install --single-version-externally-managed --record=record.txt
+
+source:
+  path: ../
+
+requirements:
+  build:
+    - python >2
+    - setuptools
+    {% for package in data.get('setup_requires', {}) %}
+    - {{ package.lower() }}
+    {% endfor %}
+
+  run:
+    - python >2
+    {% for package in data.get('install_requires', {}) %}
+    - {{ package.lower() }}
+    {% endfor %}
+
+  run_constrained:
+    {% for name, pkgs in data.get('extras_require', dict()).items() %}
+    {% for package in pkgs %}
+    - {{ package.lower() }}
+    {% endfor %}
+    {% endfor %}
+
+{% if 'test_suite' in data %}
+test:
+  requires:
+    {% for package in data.get('setup_requires', {}) %}
+    - {{ package.lower() }}
+    {% endfor %}    
+  source_files:
+    - {{ data['test_suite'] }}
+  commands:
+    - python -m pytest {{ data['test_suite'] }}
+{% endif %}

condaRecipes/post-link.sh

+if [ -e ${FSLDIR}/etc/fslconf/requestFSLpythonLink.sh ]; then 
+    $FSLDIR/etc/fslconf/requestFSLpythonLink.sh get_dataset
+fi

condaRecipes/pre-unlink.sh

+if [ -e ${FSLDIR}/etc/fslconf/requestFSLpythonUnlink.sh ]; then 
+    $FSLDIR/etc/fslconf/requestFSLpythonUnlink.sh get_dataset
+fi

openneuro-dl/openneuro_dl → get_dataset/get_dataset

@@ -31,9 +31,10 @@ parser = argparse.ArgumentParser(
 )
 # id must be a string and is not optional
 parser.add_argument(
-    'id',
+    '--id',
     type=str,
-    help="a dataset ID. Openneuro.org provides these in the form of ds###### (e.g. ds002190)"
+    help="a dataset ID. Openneuro.org provides these in the form of ds###### (e.g. ds002190)",
+    default=''
 )
 # savepath must be a string and is optional. the default is the current working dir
 parser.add_argument(
@@ -56,6 +57,13 @@ parser.add_argument(
     default=False,
     action='store_true'
 )
+# specify an open data service to use
+parser.add_argument(
+    '--service',
+    help="set the service provider that you want to download data from",
+    choices=['openneuro'],
+    default='openneuro'
+)
 
 def main():
     args = parser.parse_args()

requirements.txt

+awscli==1.16.226

setup.py

+from setuptools import setup,find_packages
+with open('requirements.txt', 'rt') as f:
+    install_requires = [l.strip() for l in f.readlines()]
+
+setup(name='get_dataset',
+	version='1.0.0',
+	description='FSL dataset downloader. Useful for downloading open neuroimaging datasets from various online repos',
+	author='Taylor Hanayik',
+	install_requires=install_requires,
+    scripts=['get_dataset/get_dataset'],
+	packages=find_packages(),
+	include_package_data=True)
+