diff --git a/mmorf/feedsRun b/mmorf/feedsRun index 6f471213643730a181119ba8673d932da60a31fb..1bb2de5cd9ad5650103e1900e49105f59640ae3c 100755 --- a/mmorf/feedsRun +++ b/mmorf/feedsRun @@ -14,10 +14,14 @@ MMORF_CONFIG=${outdir}/mmorf_config.ini cat mov_to_ref_mm.ini | \ sed "s%##MMORF_INPUT_DIR##%${indir}%g" | \ sed "s%##MMORF_OUTPUT_DIR##%${outdir}%g" > \ - ${MMORF_CONFIG} + ${MMORF_CONFIG} + +if [ "${MMORF_EXE}" == "" ]; then + MMORF_EXE=$(which mmorf) +fi echo "-----------" -echo "MMORF Test: $(which mmorf)" +echo "MMORF Test: ${MMORF_EXE}" echo "-----------" echo "" @@ -32,7 +36,7 @@ echo "" # cluster. This will just run normally if running # locally (but fsl_sub will still return a job id # that can be used in the subsequent hold call). -job_id=$(fsl_sub --coprocessor=cuda --logdir=${outdir} mmorf --version --config ${MMORF_CONFIG}) +job_id=$(fsl_sub --coprocessor=cuda --logdir=${outdir} ${MMORF_EXE} --version --config ${MMORF_CONFIG}) touch ${outdir}/wait fsl_sub --jobhold ${job_id} rm ${outdir}/wait while [ -e ${outdir}/wait ]; do