diff --git a/fsl_course/segmentation/siena/.gitkeep b/fsl_course/segmentation/siena/.gitkeep deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/fsl_course/segmentation/siena/feedsInputs b/fsl_course/segmentation/siena/feedsInputs new file mode 100644 index 0000000000000000000000000000000000000000..a26fa4e94a890ba46f4206629418baa9b836cc8a --- /dev/null +++ b/fsl_course/segmentation/siena/feedsInputs @@ -0,0 +1 @@ +fsl_course_data/seg_struc/siena diff --git a/fsl_course/segmentation/siena/feedsRun.siena b/fsl_course/segmentation/siena/feedsRun.siena new file mode 100644 index 0000000000000000000000000000000000000000..2f9c47b4498c8df84b950e281ef9b23797197c49 --- /dev/null +++ b/fsl_course/segmentation/siena/feedsRun.siena @@ -0,0 +1,10 @@ +#!/usr/bin/env bash + +outdir=$1 +datadir=$2 + +cd $outdir +cp $datadir/sub3m0.nii.gz . +cp $datadir/sub3m24.nii.gz . + +siena sub3m0 sub3m24 -d -m -b -30 diff --git a/fsl_course/segmentation/siena/feedsRun.sienax b/fsl_course/segmentation/siena/feedsRun.sienax new file mode 100644 index 0000000000000000000000000000000000000000..529ac3941cd9c1cd1c2d1d20c5ba850da6d90767 --- /dev/null +++ b/fsl_course/segmentation/siena/feedsRun.sienax @@ -0,0 +1,9 @@ +#!/usr/bin/env bash + +outdir=$1 +datadir=$2 + +cd $outdir +cp $datadir/sub3m0.nii.gz . + +sienax sub3m0 -d -b -30 -r