diff --git a/fsl_course/feat3/feedsRun5.py b/fsl_course/feat3/feedsRun5.py index 973f5c1fa2ee5ce26b6a34e1d0449a61c3fc1867..fb40cd197af87d69d8f7a11260ecdbc1ab4b1b34 100755 --- a/fsl_course/feat3/feedsRun5.py +++ b/fsl_course/feat3/feedsRun5.py @@ -24,6 +24,12 @@ newFSF = op.join(outDir, "design.fsf") cmd = "./cleanFSF.py {0} {1} {2} {3} {4} {5}".format(origFSF, newFSF, origDataDir, dataDir, outDir, origFSLDir) utils.run(cmd) +# For conda version, default_flobs.flobs is in new location + +cmd = f'''sed -i 's,etc,data/feat5,g' {newFSF}''' +utils.run(cmd) + + # run FEAT utils.run("unset SGE_ROOT; feat {0}".format(op.join(outDir, "design.fsf")))