From 171b3e889f6c6edff0f722e2000131a41369c4e6 Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@jalapeno.cluster.fmrib.ox.ac.uk>
Date: Sat, 15 Oct 2022 15:20:46 +0100
Subject: [PATCH] MNT: New path for flobs data
---
fsl_course/feat3/feedsRun5.py | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/fsl_course/feat3/feedsRun5.py b/fsl_course/feat3/feedsRun5.py
index 973f5c1..fb40cd1 100755
--- a/fsl_course/feat3/feedsRun5.py
+++ b/fsl_course/feat3/feedsRun5.py
@@ -24,6 +24,12 @@ newFSF = op.join(outDir, "design.fsf")
cmd = "./cleanFSF.py {0} {1} {2} {3} {4} {5}".format(origFSF, newFSF, origDataDir, dataDir, outDir, origFSLDir)
utils.run(cmd)
+# For conda version, default_flobs.flobs is in new location
+
+cmd = f'''sed -i 's,etc,data/feat5,g' {newFSF}'''
+utils.run(cmd)
+
+
# run FEAT
utils.run("unset SGE_ROOT; feat {0}".format(op.join(outDir, "design.fsf")))
--
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