From 1b72e69ef96c2bdc2d4a54b1c36ac08ca1dfbfcd Mon Sep 17 00:00:00 2001
From: Paul McCarthy <paulmc@fmrib.ox.ac.uk>
Date: Mon, 25 Oct 2021 16:39:51 +0100
Subject: [PATCH] BF: Wrong input file paths

---
 fsl_course/segmentation/siena/feedsRun.siena  | 4 ++--
 fsl_course/segmentation/siena/feedsRun.sienax | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/fsl_course/segmentation/siena/feedsRun.siena b/fsl_course/segmentation/siena/feedsRun.siena
index 2f9c47b..24bfe6b 100755
--- a/fsl_course/segmentation/siena/feedsRun.siena
+++ b/fsl_course/segmentation/siena/feedsRun.siena
@@ -4,7 +4,7 @@ outdir=$1
 datadir=$2
 
 cd $outdir
-cp $datadir/sub3m0.nii.gz  .
-cp $datadir/sub3m24.nii.gz .
+cp $datadir/fsl_course_data/seg_struc/siena/sub3m0.nii.gz  .
+cp $datadir/fsl_course_data/seg_struc/siena/sub3m24.nii.gz .
 
 siena sub3m0 sub3m24 -d -m -b -30 
diff --git a/fsl_course/segmentation/siena/feedsRun.sienax b/fsl_course/segmentation/siena/feedsRun.sienax
index 529ac39..c14cfd9 100755
--- a/fsl_course/segmentation/siena/feedsRun.sienax
+++ b/fsl_course/segmentation/siena/feedsRun.sienax
@@ -4,6 +4,6 @@ outdir=$1
 datadir=$2
 
 cd $outdir
-cp $datadir/sub3m0.nii.gz .
+cp $datadir/fsl_course_data/seg_struc/siena/sub3m0.nii.gz .
 
 sienax sub3m0 -d -b -30 -r
-- 
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