From 20ff9ee82db3d9be9c554515da708a091fc547b7 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Mon, 30 May 2022 11:39:30 +0100
Subject: [PATCH] RF: Typo in varname. Only request an openmp/multi-core node
for --nthr[N>1]
---
eddy/runEddy | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/eddy/runEddy b/eddy/runEddy
index a99042d..222b8f1 100755
--- a/eddy/runEddy
+++ b/eddy/runEddy
@@ -74,11 +74,15 @@ do
extra_args=""
else
- fsl_sub="fsl_sub -l ${outdir} -q long.q -s openmp,6"
# unpack eddy_cpu_nthr_N
# into eddy_cpu --nthr=N
+ fsl_sub="fsl_sub -l ${outdir} -q long.q"
exe="${exe_name%_nthr*}"
- extra_ars="--nthr=${exe_name#eddy_cpu_nthr_}"
+ nthr="${exe_name#eddy_cpu_nthr_}"
+ extra_args="--nthr=${nthr}"
+ if [ "${nthr}" != "1" ]; then
+ fsl_sub="${fsl_sub} -s openmp,${nthr}"
+ fi
fi
# fsl_sub will return an error (and not
--
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