From 38f8b08e46175da012d76070bfaa9687bf290c8c Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Thu, 25 Nov 2021 10:01:40 +0000
Subject: [PATCH] BF: Wrong variable name
---
eddy/runEddy | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)
diff --git a/eddy/runEddy b/eddy/runEddy
index 2b7c11a..3dba71d 100755
--- a/eddy/runEddy
+++ b/eddy/runEddy
@@ -19,7 +19,7 @@
set -e
-# First argument is directory in which to search
+# First argument is directory in which to search
# for eddy executables (typically $FSLDIR/bin).
# All remaining arguments are to be passed to
# eddy. Don't pass the --out option, as that is
@@ -60,7 +60,7 @@ for exe in ${cuda_exes} ${cpu_exes};
do
variant=`basename ${exe}`
variant=`echo ${variant} | sed 's/eddy_//'`
-
+
if [[ "${exe}" == *"cuda"* ]]; then
fsl_sub="fsl_sub -l ${outdir} -q cuda.q"
else
@@ -72,12 +72,12 @@ do
echo "Error submitting ${exe} ${eddy_args}"
exit 1
fi
-
+
if [[ "${exe}" == *"cuda"* ]]; then
cuda_jids="${cuda_jids} ${jid}"
else
cpu_jids="${cpu_jids} ${jid}"
- fi
+ fi
done
# If running on a cluster, wait
@@ -87,7 +87,7 @@ done
# have blocked until completion.
if [ ! -z "${SGE_ROOT}" ]; then
- # Ensure that slots are being reserved
+ # Ensure that slots are being reserved
# on the queue for CPU jobs
for jid in ${cpu_jids}; do
qalter ${jid} -R y
@@ -111,12 +111,12 @@ if [ ! -z "${SGE_ROOT}" ]; then
fi
# Gather output prefixes for each run,
-# and check that the main output file
+# and check that the main output file
# was created
outputs=""
for exe in ${cuda_exes} ${cpu_exes};
do
- tmp=`basename ${cuda_exe}`
+ tmp=`basename ${exe}`
variant=`echo ${tmp} | sed 's/eddy_//'`
prefix="${outdir}/eddyOutput_${variant}"
outputs="${outputs} ${prefix}"
--
GitLab