diff --git a/eddy/runEddy b/eddy/runEddy
index 8e583c1fcb09c3ac9ff06c6166fd0b95cfac3877..24df8ae2c4a4508e065d86f023732a9dd8159256 100755
--- a/eddy/runEddy
+++ b/eddy/runEddy
@@ -62,7 +62,7 @@ do
   variant=`echo ${variant} | sed 's/eddy_//'`
 
   if [[ "${exe}" == *"cuda"* ]]; then
-    fsl_sub="fsl_sub -l ${outdir} -q cuda.q"
+    fsl_sub="fsl_sub -l ${outdir} --coprocessor=cuda"
   else
     fsl_sub="fsl_sub -l ${outdir} -q long.q -s openmp,6"
   fi