From 5879db289f9f33a46cfbe6a1a01508f6c3ab8161 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Mon, 7 Jan 2019 23:11:38 +0000
Subject: [PATCH] Only run mist on a few structures

---
 mist/feedsRun | 9 +--------
 1 file changed, 1 insertion(+), 8 deletions(-)

diff --git a/mist/feedsRun b/mist/feedsRun
index 3cfe70a..31052d5 100755
--- a/mist/feedsRun
+++ b/mist/feedsRun
@@ -12,14 +12,7 @@ pushd $outdir > /dev/null
 
 cp -LR $datadir/* .
 
-mist_1_train
+mist_1_train hippocampus thalamus red_nucleus
 mist_2_fit
 
-# save a bit of space - remove input data 
-for subj in ./???; do
-    rm $subj/T1.nii.gz
-    rm $subj/T1_brain.nii.gz
-    rm $subj/FA.nii.gz
-done
-
 popd > /dev/null
-- 
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