diff --git a/fsl_course/feat3/feedsRun5.py b/fsl_course/feat3/feedsRun5.py index fb40cd197af87d69d8f7a11260ecdbc1ab4b1b34..b73cb9211c248b734ea1a560e9882a91d515a493 100755 --- a/fsl_course/feat3/feedsRun5.py +++ b/fsl_course/feat3/feedsRun5.py @@ -26,9 +26,10 @@ utils.run(cmd) # For conda version, default_flobs.flobs is in new location -cmd = f'''sed -i 's,etc,data/feat5,g' {newFSF}''' -utils.run(cmd) - +with open(newFSF, 'rt') as f: + contents = f.read() +with open(newFSF, 'wt') as f: + f.write(contents.replace('/etc/', '/data/feat5/')) # run FEAT utils.run("unset SGE_ROOT; feat {0}".format(op.join(outDir, "design.fsf")))