From 5a172e5b31baa8f4d32a2ed6112ab53c410156b8 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Tue, 31 Jan 2023 16:18:28 +0000
Subject: [PATCH] RF: Usage incompatible wtih macOS version of sed
---
fsl_course/feat3/feedsRun5.py | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/fsl_course/feat3/feedsRun5.py b/fsl_course/feat3/feedsRun5.py
index fb40cd1..b73cb92 100755
--- a/fsl_course/feat3/feedsRun5.py
+++ b/fsl_course/feat3/feedsRun5.py
@@ -26,9 +26,10 @@ utils.run(cmd)
# For conda version, default_flobs.flobs is in new location
-cmd = f'''sed -i 's,etc,data/feat5,g' {newFSF}'''
-utils.run(cmd)
-
+with open(newFSF, 'rt') as f:
+ contents = f.read()
+with open(newFSF, 'wt') as f:
+ f.write(contents.replace('/etc/', '/data/feat5/'))
# run FEAT
utils.run("unset SGE_ROOT; feat {0}".format(op.join(outDir, "design.fsf")))
--
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