diff --git a/fsl_course/feat2/feedsRun b/fsl_course/feat2/feedsRun index 74f0435a1bbc8cd435e64b7944fc7f9a0e0c09a4..f502a3ea1c5154e8e052fda1bba9132b7fdf8888 100755 --- a/fsl_course/feat2/feedsRun +++ b/fsl_course/feat2/feedsRun @@ -40,9 +40,9 @@ function test_fsf { #Hack - copy data to output folder to allow modification mkdir -p $outdir/fsl_course_data/fmri -cp -Lr $subdatadir/ptt $outdir/fsl_course_data/fmri -cp -Lr $subdatadir/3lev $outdir/fsl_course_data/fmri -chmod u+w -R $outdir/fsl_course_data/fmri +cp -LR $subdatadir/ptt $outdir/fsl_course_data/fmri +cp -LR $subdatadir/3lev $outdir/fsl_course_data/fmri +chmod -R u+w $outdir/fsl_course_data/fmri #Purge reg_standard to force upscales rm -r ${outdir}/fsl_course_data/fmri/ptt/??/*.feat/reg_standard rm -r ${outdir}/fsl_course_data/fmri/3lev/????????/????/*.feat/reg_standard