From 63092381a160844fc1533a6f1dbeed611bb6f549 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <paulmc@fmrib.ox.ac.uk>
Date: Thu, 25 Oct 2018 15:42:03 +0100
Subject: [PATCH] Fix calls to cp/chmod so they work on both linux and macos.
---
fsl_course/feat2/feedsRun | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/fsl_course/feat2/feedsRun b/fsl_course/feat2/feedsRun
index 74f0435..f502a3e 100755
--- a/fsl_course/feat2/feedsRun
+++ b/fsl_course/feat2/feedsRun
@@ -40,9 +40,9 @@ function test_fsf {
#Hack - copy data to output folder to allow modification
mkdir -p $outdir/fsl_course_data/fmri
-cp -Lr $subdatadir/ptt $outdir/fsl_course_data/fmri
-cp -Lr $subdatadir/3lev $outdir/fsl_course_data/fmri
-chmod u+w -R $outdir/fsl_course_data/fmri
+cp -LR $subdatadir/ptt $outdir/fsl_course_data/fmri
+cp -LR $subdatadir/3lev $outdir/fsl_course_data/fmri
+chmod -R u+w $outdir/fsl_course_data/fmri
#Purge reg_standard to force upscales
rm -r ${outdir}/fsl_course_data/fmri/ptt/??/*.feat/reg_standard
rm -r ${outdir}/fsl_course_data/fmri/3lev/????????/????/*.feat/reg_standard
--
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