diff --git a/diffusion_multishell/feedsInputs b/diffusion_multishell/feedsInputs new file mode 100755 index 0000000000000000000000000000000000000000..cb268812e613c6758c5d55ccd4d761570ac40b1d --- /dev/null +++ b/diffusion_multishell/feedsInputs @@ -0,0 +1 @@ +diffusion_multishell diff --git a/diffusion_multishell/feedsRun.kurt b/diffusion_multishell/feedsRun.kurt new file mode 100755 index 0000000000000000000000000000000000000000..1592f98e9fb34d1735e695b768154ab81c97f420 --- /dev/null +++ b/diffusion_multishell/feedsRun.kurt @@ -0,0 +1,9 @@ +#!/usr/bin/env sh + +# Runs dtifit with the --kurt flag on the multi-shell diffusion data + +outdir=$1 +datadir=$2/diffusion_multishell + +dtifit -k ${datadir}/data.nii.gz -b ${datadir}/bvals -r ${datadir}/bvecs -m ${datadir}/nodif_brain_mask -o ${outdir}/kurt --kurt +dtifit -k ${datadir}/data.nii.gz -b ${datadir}/bvals -r ${datadir}/bvecs -m ${datadir}/nodif_brain_mask -o ${outdir}/kurt_wls --kurt --wls diff --git a/diffusion_multishell/feedsRun.kurtdir b/diffusion_multishell/feedsRun.kurtdir new file mode 100755 index 0000000000000000000000000000000000000000..bc8653a335cd0c9aecfccbe240713ef411d197e8 --- /dev/null +++ b/diffusion_multishell/feedsRun.kurtdir @@ -0,0 +1,8 @@ +#!/usr/bin/env sh + +# Runs dtifit with the --kurt flag on the multi-shell diffusion data + +outdir=$1 +datadir=$2/diffusion_multishell + +dtifit -k ${datadir}/data.nii.gz -b ${datadir}/bvals -r ${datadir}/bvecs -m ${datadir}/nodif_brain_mask -o ${outdir}/kurtdir --kurtdir