diff --git a/unit_tests/fdt/vecreg/feedsRun.normal b/unit_tests/fdt/vecreg/feedsRun.normal new file mode 100755 index 0000000000000000000000000000000000000000..52924e18c862faf10b2173d48895157965eae3cb --- /dev/null +++ b/unit_tests/fdt/vecreg/feedsRun.normal @@ -0,0 +1,25 @@ +#!/usr/bin/env fslpython + +import os +import sys + +from pathlib import Path + +from fsl.wrappers import vecreg + + +def main(): + fsldir = Path(os.environ['FSLDIR']) + outdir = Path(sys.argv[1]) + indir = Path(sys.argv[2])/'fsl_course_data'/'fdt2' + dyads = indir/'subj1.bedpostX'/'dyads1.nii.gz' + std = fsldir/'data'/'standard'/'MNI152_T1_2mm.nii.gz' + diff2std_warp = indir/'subj1.bedpostX'/'xfms'/'diff2standard_warp.nii.gz' + + dyads_std = outdir/'dyads1_std.nii.gz' + vecreg(dyads, dyads_std, std, warpfield=diff2std_warp) + + + +if __name__ == '__main__': + main() diff --git a/unit_tests/fdt/vecreg/feedsRun b/unit_tests/fdt/vecreg/feedsRun.premat_postmat old mode 100755 new mode 100644 similarity index 98% rename from unit_tests/fdt/vecreg/feedsRun rename to unit_tests/fdt/vecreg/feedsRun.premat_postmat index 49bea9f13a1c287b1360846b3b1a870e2d468e26..5bb81a54810858c98fe3273692eb1441b5f53583 --- a/unit_tests/fdt/vecreg/feedsRun +++ b/unit_tests/fdt/vecreg/feedsRun.premat_postmat @@ -3,8 +3,6 @@ import os import sys -sys.path.append('/home/paulmc/Projects/fslpy/') - from pathlib import Path import numpy as np diff --git a/unit_tests/flirt/applyxfm/feedsRun b/unit_tests/flirt/applyxfm/feedsRun index 4a96a86fc37741d195e2cd633acbe79a4ca82f2e..d627cac1d627422677b592c5e24b2433364c97dd 100755 --- a/unit_tests/flirt/applyxfm/feedsRun +++ b/unit_tests/flirt/applyxfm/feedsRun @@ -19,8 +19,6 @@ thisdir = op.dirname(op.abspath(__file__)) def compare_images(a, b): - print(f'Comparing images {a} and {b}') - a = fslimage.Image(a) b = fslimage.Image(b) adata = a.data