diff --git a/fsl_course/fdt1/test_topup_eddy.sh b/fsl_course/fdt1/test_topup_eddy.sh index b60cab743e07b418367d45f5b0e589cf52fec845..a2e6242a18c4bc08f269d8b66700968dabd0cf20 100755 --- a/fsl_course/fdt1/test_topup_eddy.sh +++ b/fsl_course/fdt1/test_topup_eddy.sh @@ -40,13 +40,13 @@ if which eddy_openmp &> /dev/null; then --index=$subdatadir/index.txt --acqp=$subdatadir/acqparams.txt \ --bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \ --fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \ - --out=$outdir/eddy_unwarped_images & sleep 10; kill -TERM $! + --out=$outdir/eddy_unwarped_images & sleep 10; kill -s TERM $! elif which eddy &> /dev/null; then eddy --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \ --index=$subdatadir/index.txt --acqp=$subdatadir/acqparams.txt \ --bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \ --fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \ - --out=$outdir/eddy_unwarped_image & sleep 10; kill -TERM $! + --out=$outdir/eddy_unwarped_image & sleep 10; kill -s TERM $! fi cp $subdatadir/pre_baked/eddy_unwarped_images* $outdir