From 9f42c13d3e20100ee5906e592a3850a2162e9706 Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@jalapeno.cluster.fmrib.ox.ac.uk>
Date: Wed, 11 Aug 2021 16:31:10 +0100
Subject: [PATCH] BF: Portably syntax for kill
---
fsl_course/fdt1/test_topup_eddy.sh | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/fsl_course/fdt1/test_topup_eddy.sh b/fsl_course/fdt1/test_topup_eddy.sh
index b60cab7..a2e6242 100755
--- a/fsl_course/fdt1/test_topup_eddy.sh
+++ b/fsl_course/fdt1/test_topup_eddy.sh
@@ -40,13 +40,13 @@ if which eddy_openmp &> /dev/null; then
--index=$subdatadir/index.txt --acqp=$subdatadir/acqparams.txt \
--bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \
--fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \
- --out=$outdir/eddy_unwarped_images & sleep 10; kill -TERM $!
+ --out=$outdir/eddy_unwarped_images & sleep 10; kill -s TERM $!
elif which eddy &> /dev/null; then
eddy --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \
--index=$subdatadir/index.txt --acqp=$subdatadir/acqparams.txt \
--bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \
--fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \
- --out=$outdir/eddy_unwarped_image & sleep 10; kill -TERM $!
+ --out=$outdir/eddy_unwarped_image & sleep 10; kill -s TERM $!
fi
cp $subdatadir/pre_baked/eddy_unwarped_images* $outdir
--
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