From c9cb9e6fd0b9931a34aae9cb05148759e9c6dbb4 Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Mon, 30 May 2022 14:53:16 +0100
Subject: [PATCH] BF: expand array when calling fsl_sub
---
eddy/runEddy | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/eddy/runEddy b/eddy/runEddy
index fcbfb2d..ab47a2e 100755
--- a/eddy/runEddy
+++ b/eddy/runEddy
@@ -87,7 +87,7 @@ do
# output a job id) if we try to run a
# cuda exe on a non-cuda-capable machine
# or queue. So we allow it to fail.
- jid=$(${fsl_sub} ${exe} --out=${outdir}/eddyOutput_${variant} ${eddy_args} || true)
+ jid=$(${fsl_sub} ${exe} --out=${outdir}/eddyOutput_${variant} ${eddy_args[@]} || true)
if [ "${jid}" == "" ]; then
echo "Error submitting ${exe_name} - skipping"
continue
--
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