From cf25fd6722ab59079d7ebaf165fa52ae6a35f5d8 Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@jalapeno19.cluster.fmrib.ox.ac.uk>
Date: Tue, 22 Aug 2023 16:41:23 +0100
Subject: [PATCH] BF: /opt/fmrib/fsl may not contain activate
---
unit_tests/utils/feedsRun.fslStartup | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/unit_tests/utils/feedsRun.fslStartup b/unit_tests/utils/feedsRun.fslStartup
index d5aa8a6..a20d050 100755
--- a/unit_tests/utils/feedsRun.fslStartup
+++ b/unit_tests/utils/feedsRun.fslStartup
@@ -1,5 +1,7 @@
#!/usr/bin/env fslpython
+#Note this script requires a conda activate script to be on the PATH
+
import os
import shlex
import tempfile
@@ -32,7 +34,7 @@ def run(cmd, ompthreads=None, blasthreads=None, fslskipglobal=None):
def main():
- buildcmds = ['source $FSLDIR/bin/activate $FSLDIR',
+ buildcmds = ['source activate $FSLDIR',
'source $FSLDIR/etc/fslconf/fsl-devel.sh',
'make']
sp.run('; '.join(buildcmds), check=True, shell=True)
--
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