diff --git a/fsl_course/fdt1/test_topup_eddy.sh b/fsl_course/fdt1/test_topup_eddy.sh index 3e01ff262f7f091256e46265cf9a4b323d46acb4..8e1a4f08a683862781149939ebb0a2b0d35faf3b 100755 --- a/fsl_course/fdt1/test_topup_eddy.sh +++ b/fsl_course/fdt1/test_topup_eddy.sh @@ -42,7 +42,7 @@ eddy_openmp --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \ --fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \ --out=$outdir/eddy_unwarped_images & sleep 10; kill -TERM $! elif [ `bash -c "test -e eddy; echo \$?; exit 0"` -eq "0" ]; then -eddy_openmp --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \ +eddy --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \ --index=$subdatadir/index.txt --acqp=$subdatadir/acqparams.txt \ --bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \ --fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \