From d8e44c98e07b454fc40c09782d32494a84710bca Mon Sep 17 00:00:00 2001
From: Paul McCarthy <paulmc@fmrib.ox.ac.uk>
Date: Fri, 26 Oct 2018 10:27:17 +0100
Subject: [PATCH] Fix eddy call

---
 fsl_course/fdt1/test_topup_eddy.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/fsl_course/fdt1/test_topup_eddy.sh b/fsl_course/fdt1/test_topup_eddy.sh
index 3e01ff2..8e1a4f0 100755
--- a/fsl_course/fdt1/test_topup_eddy.sh
+++ b/fsl_course/fdt1/test_topup_eddy.sh
@@ -42,7 +42,7 @@ eddy_openmp --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \
   --fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \
   --out=$outdir/eddy_unwarped_images & sleep 10; kill -TERM $!
 elif [ `bash -c "test -e eddy; echo \$?; exit 0"` -eq "0" ]; then
-eddy_openmp --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \
+eddy --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \
   --index=$subdatadir/index.txt --acqp=$subdatadir/acqparams.txt \
   --bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \
   --fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \
-- 
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