From dd3e1bc52b4879105e4337619be2f6f8ec09afea Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@jalapeno18.cluster.fmrib.ox.ac.uk>
Date: Fri, 18 Mar 2022 10:26:45 +0000
Subject: [PATCH] BF: feedsRun was unsetting SGE_ROOT causing new fsl_sub to
 fail

---
 fsl_course/fdt/bedpostx_gpu/feedsRun | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/fsl_course/fdt/bedpostx_gpu/feedsRun b/fsl_course/fdt/bedpostx_gpu/feedsRun
index a5aed2b..7341b6d 100755
--- a/fsl_course/fdt/bedpostx_gpu/feedsRun
+++ b/fsl_course/fdt/bedpostx_gpu/feedsRun
@@ -1,12 +1,9 @@
 #!/bin/bash
 
-# This test needs to be executed
-# on a CUDA-capable machine
+# This test will attempt to submit to a cuda-capable queue via fsl_sub
 
 set -e
 
-unset SGE_ROOT
-
 outdir=$1
 datadir=$2
 
-- 
GitLab