diff --git a/fsl_course/fdt1/test_topup_eddy.sh b/fsl_course/fdt1/test_topup_eddy.sh index c03aa2c8dcf23aa49276a7ff7d2e7fd8b5db112d..b60cab743e07b418367d45f5b0e589cf52fec845 100755 --- a/fsl_course/fdt1/test_topup_eddy.sh +++ b/fsl_course/fdt1/test_topup_eddy.sh @@ -41,7 +41,7 @@ if which eddy_openmp &> /dev/null; then --bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \ --fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \ --out=$outdir/eddy_unwarped_images & sleep 10; kill -TERM $! -elif which eddy_openmp &> /dev/null; then +elif which eddy &> /dev/null; then eddy --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \ --index=$subdatadir/index.txt --acqp=$subdatadir/acqparams.txt \ --bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \