From e17d175a2d5fb2d111c8b9b840968cda85cf66b3 Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@jalapeno19.cluster.fmrib.ox.ac.uk>
Date: Tue, 10 Aug 2021 16:28:41 +0100
Subject: [PATCH] BF: Second test should be for eddy not eddy_openmp
---
fsl_course/fdt1/test_topup_eddy.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/fsl_course/fdt1/test_topup_eddy.sh b/fsl_course/fdt1/test_topup_eddy.sh
index c03aa2c..b60cab7 100755
--- a/fsl_course/fdt1/test_topup_eddy.sh
+++ b/fsl_course/fdt1/test_topup_eddy.sh
@@ -41,7 +41,7 @@ if which eddy_openmp &> /dev/null; then
--bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \
--fwhm=0 --topup=$outdir/topup_AP_PA_b0 --flm=quadratic \
--out=$outdir/eddy_unwarped_images & sleep 10; kill -TERM $!
-elif which eddy_openmp &> /dev/null; then
+elif which eddy &> /dev/null; then
eddy --imain=$subdatadir/dwidata --mask=$outdir/hifi_nodif_brain_mask \
--index=$subdatadir/index.txt --acqp=$subdatadir/acqparams.txt \
--bvecs=$subdatadir/bvecs --bvals=$subdatadir/bvals \
--
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