From eab4b1bd9ec0ed2fa0981bbaed47c3b5a491135a Mon Sep 17 00:00:00 2001
From: Matthew Webster <mwebster@jalapeno19.cluster.fmrib.ox.ac.uk>
Date: Fri, 14 Oct 2022 14:57:19 +0100
Subject: [PATCH] BF: feedsRun writing to test directory, not output directory
---
unit_tests/fugue/applywarp/feedsRun | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/unit_tests/fugue/applywarp/feedsRun b/unit_tests/fugue/applywarp/feedsRun
index 73b53bb..0fa44cb 100755
--- a/unit_tests/fugue/applywarp/feedsRun
+++ b/unit_tests/fugue/applywarp/feedsRun
@@ -1,6 +1,6 @@
#!/usr/bin/env fslpython
-
+import os
import shlex
import subprocess as sp
import numpy as np
@@ -78,4 +78,5 @@ def test_applywarp_uses_sqform_correctly():
if __name__ == '__main__':
+ os.chdir(sys.argv[2])
test_applywarp_uses_sqform_correctly()
--
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