From 85de1166bc66d03bb249abc071b80f603a68f8cb Mon Sep 17 00:00:00 2001
From: Paul McCarthy <pauldmccarthy@gmail.com>
Date: Tue, 28 Jan 2025 16:41:35 +0000
Subject: [PATCH] New vecreg test for basic/normal usage
---
unit_tests/fdt/vecreg/feedsRun.normal | 25 +++++++++++++++++++
.../{feedsRun => feedsRun.premat_postmat} | 2 --
unit_tests/flirt/applyxfm/feedsRun | 2 --
3 files changed, 25 insertions(+), 4 deletions(-)
create mode 100755 unit_tests/fdt/vecreg/feedsRun.normal
rename unit_tests/fdt/vecreg/{feedsRun => feedsRun.premat_postmat} (98%)
mode change 100755 => 100644
diff --git a/unit_tests/fdt/vecreg/feedsRun.normal b/unit_tests/fdt/vecreg/feedsRun.normal
new file mode 100755
index 0000000..52924e1
--- /dev/null
+++ b/unit_tests/fdt/vecreg/feedsRun.normal
@@ -0,0 +1,25 @@
+#!/usr/bin/env fslpython
+
+import os
+import sys
+
+from pathlib import Path
+
+from fsl.wrappers import vecreg
+
+
+def main():
+ fsldir = Path(os.environ['FSLDIR'])
+ outdir = Path(sys.argv[1])
+ indir = Path(sys.argv[2])/'fsl_course_data'/'fdt2'
+ dyads = indir/'subj1.bedpostX'/'dyads1.nii.gz'
+ std = fsldir/'data'/'standard'/'MNI152_T1_2mm.nii.gz'
+ diff2std_warp = indir/'subj1.bedpostX'/'xfms'/'diff2standard_warp.nii.gz'
+
+ dyads_std = outdir/'dyads1_std.nii.gz'
+ vecreg(dyads, dyads_std, std, warpfield=diff2std_warp)
+
+
+
+if __name__ == '__main__':
+ main()
diff --git a/unit_tests/fdt/vecreg/feedsRun b/unit_tests/fdt/vecreg/feedsRun.premat_postmat
old mode 100755
new mode 100644
similarity index 98%
rename from unit_tests/fdt/vecreg/feedsRun
rename to unit_tests/fdt/vecreg/feedsRun.premat_postmat
index 49bea9f..5bb81a5
--- a/unit_tests/fdt/vecreg/feedsRun
+++ b/unit_tests/fdt/vecreg/feedsRun.premat_postmat
@@ -3,8 +3,6 @@
import os
import sys
-sys.path.append('/home/paulmc/Projects/fslpy/')
-
from pathlib import Path
import numpy as np
diff --git a/unit_tests/flirt/applyxfm/feedsRun b/unit_tests/flirt/applyxfm/feedsRun
index 4a96a86..d627cac 100755
--- a/unit_tests/flirt/applyxfm/feedsRun
+++ b/unit_tests/flirt/applyxfm/feedsRun
@@ -19,8 +19,6 @@ thisdir = op.dirname(op.abspath(__file__))
def compare_images(a, b):
- print(f'Comparing images {a} and {b}')
-
a = fslimage.Image(a)
b = fslimage.Image(b)
adata = a.data
--
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