Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
FSL
pytreat-practicals-2018
Commits
4af93434
Commit
4af93434
authored
Jan 18, 2018
by
Paul McCarthy
🚵
Browse files
Readme updates
parent
2ab0ed4f
Changes
1
Hide whitespace changes
Inline
Side-by-side
README.md
View file @
4af93434
...
...
@@ -4,7 +4,9 @@
This repository contains Jupyter notebooks and data for the 2018 WIN PyTreat.
The master repository can be found at: https://git.fmrib.ox.ac.uk/fsl/pytreat-2018-practicals
The master repository can be found at:
https://git.fmrib.ox.ac.uk/fsl/pytreat-2018-practicals
To contribute to the practicals:
...
...
@@ -14,3 +16,31 @@ To contribute to the practicals:
2.
Make your changes on your fork
3.
Submit a merge request back to the master repository
To run these notebooks in the
`fslpython`
environment, you must first install
jupyter:
```
source $FSLDIR/fslpython/bin/activate fslpython
conda install jupyter
pip install notedown
source deactivate
ln -s $FSLDIR/fslpython/envs/fslpython/bin/jupyter $FSLDIR/bin/fsljupyter
ln -s $FSLDIR/fslpython/envs/fslpython/bin/notedown $FSLDIR/bin/fslnotedown
```
> [`notedown`](https://github.com/aaren/notedown) is a handy tool which allows
> you to convert a markdownd (`.md`) file to a Jupyter notebook (`.ipynb`)
> file. So you can write your practical in your text editor of choice, and
> then convert it into a notebook, instead of writing the practical in the web
> browser interface.
Now you can start the notebook server from the repository root:
```
fsljupyter notebook
```
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment