From 65003328969a987ddcee437099c21d1f4938551a Mon Sep 17 00:00:00 2001
From: Stephen Smith <steve@fmrib.ox.ac.uk>
Date: Thu, 12 Aug 2004 10:46:24 +0000
Subject: [PATCH] *** empty log message ***
---
NOTES | 10 ++++++++++
siena_diff.c | 1 +
2 files changed, 11 insertions(+)
diff --git a/NOTES b/NOTES
index f3a6ed8..3f13528 100644
--- a/NOTES
+++ b/NOTES
@@ -1,3 +1,13 @@
siena_diff - cannot compile with optimisation turned on (gcc bug)
+37744 nonzero voxels in avg152T1_edges
+say 20000 real edge voxels (ignoring corner points)
+
+smooth with sigma=10mm=5voxels
+thus 1 resel = approx 100 voxels
+but intrinsic smoothness factor = 2
+-> 200 voxels
+
+thus bonf correct by factor of 100
+thus uncorrected 0.05 -> 0.0002 -> z=3.7
diff --git a/siena_diff.c b/siena_diff.c
index bfb8ad6..fe916ec 100644
--- a/siena_diff.c
+++ b/siena_diff.c
@@ -601,6 +601,7 @@ seg1=im.i;
for(x=0;x<size;x++)
if (seg1[x]>1)
+ /*if (seg1[x]>2)*/
seg1[x]=1;
else
seg1[x]=0;
--
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