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FSL
ukbparse
Commits
639c986c
Commit
639c986c
authored
May 09, 2019
by
Paul McCarthy
🚵
Browse files
BF: Typos, and wasn't generating metadata list
parent
6986da15
Changes
2
Hide whitespace changes
Inline
Side-by-side
ukbparse/data/processing.tsv
View file @
639c986c
Variable Process
40001 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=icd10.numdesc)
40002 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=icd10.numdesc)
40006 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=icd10.numdesc)
41201 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=icd10.numdesc)
41202 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=icd10.numdesc)
41204 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=icd10.numdesc)
41270 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=icd10.numdesc)
40001 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=
'
icd10.numdesc
'
)
40002 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=
'
icd10.numdesc
'
)
40006 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=
'
icd10.numdesc
'
)
41201 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=
'
icd10.numdesc
'
)
41202 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=
'
icd10.numdesc
'
)
41204 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=
'
icd10.numdesc
'
)
41270 binariseCategorical(acrossVisits=True, acrossInstances=True, metaproc=
'
icd10.numdesc
'
)
all_independent_except,40001,40002,40006,41202,41204,41270 removeIfSparse(minpres=51, maxcat=0.99, abscat=False)
40001 removeIfSparse(mincat=10)
40002 removeIfSparse(mincat=10)
...
...
ukbparse/processing.py
View file @
639c986c
...
...
@@ -153,6 +153,7 @@ def runProcess(proc, dtable, vids):
if
len
(
result
)
==
2
:
add
.
extend
(
result
[
0
])
addvids
.
extend
(
result
[
1
])
addmeta
.
extend
([
None
]
*
len
(
result
[
1
]))
# columns to remove, and
# series/vids to add
...
...
@@ -174,7 +175,7 @@ def runProcess(proc, dtable, vids):
else
:
raise
error
if
len
(
add
)
>
0
:
dtable
.
addColumns
(
add
,
addvids
,
meta
)
if
len
(
add
)
>
0
:
dtable
.
addColumns
(
add
,
addvids
,
add
meta
)
if
len
(
remove
)
>
0
:
dtable
.
removeColumns
(
remove
)
...
...
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