Commits · 8e0df3fcbbdbd024a61d98a1c50a72f353634feb · FSL / ukbparse

07 May, 2019 6 commits
- DOC: changelog · 8e0df3fc
  Paul McCarthy authored May 07, 2019
  
  8e0df3fc
- MNT: update zenodo description · 83201a35
  Paul McCarthy authored May 07, 2019
  
  83201a35
- MNT: update pypi description · 2c9ac1ed
  Paul McCarthy authored May 07, 2019
  
  2c9ac1ed
- RF: force rounding of 0.5 up to the next integer · 2c3655cb
  Paul McCarthy authored May 07, 2019
  
  2c3655cb
- DOC: readme · e2d31c35
  Paul McCarthy authored May 07, 2019
  
  e2d31c35
- ENH: New --description_file option to save column descriptions out to · 855c17d7
  Paul McCarthy authored May 07, 2019
```
file. Used in fmrib config
```
  855c17d7
06 May, 2019 26 commits
- DOC: Changelog · 83399fcb
  Paul McCarthy authored May 06, 2019
  
  83399fcb
- RF: isSparse accepts but complains about absolute · 878c4d8e
  Paul McCarthy authored May 06, 2019
  
  878c4d8e
- TEST: version · 71fdd397
  Paul McCarthy authored May 06, 2019
  
  71fdd397
- MNT: version · 3d1bc412
  Paul McCarthy authored May 06, 2019
  
  3d1bc412
- TEST: Notebook updates · c00f6724
  Paul McCarthy authored May 06, 2019
  
  c00f6724
- RF: Use ceil instead of round. Accept absolute argument, but complain a · ea9ea6da
  Paul McCarthy authored May 06, 2019
```
little.
```
  ea9ea6da
- RF: Change default processing - ICD10 vars are subject to a different sparsity · 9962883f
  Paul McCarthy authored May 06, 2019
```
test
```
  9962883f
- TEST: Picking off coverage misses (Process.__repr__) · 474dea4e
  Paul McCarthy authored May 06, 2019
  
  474dea4e
- BF: Wrong return values from binariseCategorical/expandCompound (although · 06695878
  Paul McCarthy authored May 06, 2019
```
they were still working)
```
  06695878
- TEST: Test return values from processing functions · 76b54e2a
  Paul McCarthy authored May 06, 2019
  
  76b54e2a
- TEST: Test that different process variable specs do their thing. · a1807e3c
  Paul McCarthy authored May 06, 2019
```
Moved processing tests about a bit.
```
  a1807e3c
- TEST: Skip builtin rules · ae04291a
  Paul McCarthy authored May 06, 2019
  
  ae04291a
- RF: Tweak to isSparse threhold adjustment · 4955ca21
  Paul McCarthy authored May 06, 2019
  
  4955ca21
- TEST: Test too large isSparse mincat/maxcat · b6cf0a5c
  Paul McCarthy authored May 06, 2019
  
  b6cf0a5c
- RF: Adjust maxcat if it's bigger than the data size · ed5f35ce
  Paul McCarthy authored May 06, 2019
  
  ed5f35ce
- TEST: New mincat test, adjust others · ce677115
  Paul McCarthy authored May 06, 2019
  
  ce677115
- ENH,RF: isSparse function has a new "mincat" test, which tests the size of the · 5a5cf7d5
  Paul McCarthy authored May 06, 2019
```
smallest category
```
  5a5cf7d5
- TEST: Update tests for bnew process table format · c0efc9b5
  Paul McCarthy authored May 06, 2019
  
  c0efc9b5
- ENH: New "all_except" and "all_independent_except" options in processing · 9dfbf621
  Paul McCarthy authored May 06, 2019
```
table, allowing vids to be excluded
```
  9dfbf621
- Merge branch 'bf/recoding_bug' into 'master' · 19a96d72
  Paul McCarthy authored May 06, 2019
```
Bf/recoding bug

See merge request fsl/ukbparse!121
```
  19a96d72
- DOC: Changelog · b8974248
  Paul McCarthy authored May 06, 2019
  
  b8974248
- TEST: update demo test for change to built-in rules · da06a2ff
  Paul McCarthy authored May 06, 2019
  
  da06a2ff
- RF: Check validity of recoding and parent-child value replacement rules · 5af2cdf6
  Paul McCarthy authored May 06, 2019
  
  5af2cdf6
- BF: Fixed/adjusted recoding for DC 100012 · 5fa3ad2f
  Paul McCarthy authored May 06, 2019
  
  5fa3ad2f
- DOC: README fix · 1e127e83
  Paul McCarthy authored May 06, 2019
  
  1e127e83
- DOC: Removed obsolete docs · 88cc84b5
  Paul McCarthy authored May 06, 2019
  
  88cc84b5
26 Apr, 2019 8 commits
- Merge branch 'rf/categories' into 'master' · 98a9f0b7
  Paul McCarthy authored Apr 26, 2019
```
Rf/categories

See merge request fsl/ukbparse!120
```
  98a9f0b7
- TEST: notebook · ef4efebc
  Paul McCarthy authored Apr 26, 2019
  
  ef4efebc
- MNT: version · 08c5be75
  Paul McCarthy authored Apr 26, 2019
  
  08c5be75
- TEST: version · 01316dc9
  Paul McCarthy authored Apr 26, 2019
  
  01316dc9
- DOC: changelog · c618cba3
  Paul McCarthy authored Apr 26, 2019
  
  c618cba3
- RF: Adjust categories exported by fmrib configuration · 2b3e5174
  Paul McCarthy authored Apr 26, 2019
  
  2b3e5174
- RF: Updates to built-in categories · c175ac1d
  Paul McCarthy authored Apr 26, 2019
  
  c175ac1d
- DOC: Fix readme · 6482b4c9
  Paul McCarthy authored Apr 26, 2019
  
  6482b4c9