From 2c9d93fdede3be0678c854236dcc167e82a69e70 Mon Sep 17 00:00:00 2001
From: Sean Fitzgibbon <seanf@fmrib.ox.ac.uk>
Date: Wed, 28 Apr 2021 21:38:25 +0100
Subject: [PATCH] Added install instructions for nilearn
---
.../data_visualisation/nilearn/nilearn.ipynb | 13 ++++++++++++-
1 file changed, 12 insertions(+), 1 deletion(-)
diff --git a/applications/data_visualisation/nilearn/nilearn.ipynb b/applications/data_visualisation/nilearn/nilearn.ipynb
index 7d966e2..222d3b4 100644
--- a/applications/data_visualisation/nilearn/nilearn.ipynb
+++ b/applications/data_visualisation/nilearn/nilearn.ipynb
@@ -27,7 +27,18 @@
"3. 2D maximum intensity projection\n",
"4. Surfaces\n",
"\n",
- "Firstly we will import the necessary packages for this notebook: "
+ "`nilearn` is not installed in the `fslpython` environment so you will need to install it to run this notebook. In a terminal run the following command (you will need admin privileges):\n",
+ "\n",
+ "```\n",
+ "sudo $FSLDIR/fslpython/bin/conda install -c conda-forge -n fslpython nilearn\n",
+ "```"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "First we will import the necessary packages for this notebook: "
]
},
{
--
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