diff --git a/talks/introduction/pytreat_intro.ipynb b/talks/introduction/pytreat_intro.ipynb
index ac3f33b25153815a6e14e776344460d029105fcf..f4c8df06b5e2b11455eef59784cd8c46e6852455 100644
--- a/talks/introduction/pytreat_intro.ipynb
+++ b/talks/introduction/pytreat_intro.ipynb
@@ -4,21 +4,21 @@
"cell_type": "markdown",
"metadata": {},
"source": [
- "# Welcome to the WIN PyTreat 2018!\n",
+ "# Welcome to the WIN PyTreat 2020!\n",
"\n",
"\n",
- "Program: https://docs.google.com/document/d/10CwLEhUi-YiwfC2F40QCVm6eEVwKiaXkfTKz67xWAfM/edit?usp=sharing\n",
+ "Program: https://docs.google.com/document/d/11LQgxC-LZPG_TXS3MP9tYXNWABAQdTI00iavk-tKttU/edit\n",
"\n",
"\n",
"__We need to do some setting up, so get your laptop ready!__\n",
"\n",
- "__Make sure you have FSL 5.0.10 installed and working!__\n",
+ "__Make sure you have FSL 6.0.3 installed and working!__\n",
"\n",
"__End all sentences with an exclamation mark!__\n",
"\n",
"__Open this page in your web browser!__\n",
"\n",
- "https://git.fmrib.ox.ac.uk/fsl/pytreat-2018-practicals/tree/master/talks/introduction/pytreat_intro.md\n",
+ "https://git.fmrib.ox.ac.uk/fsl/pytreat-practicals-2020/tree/master/talks/introduction/pytreat_intro.md\n",
"\n",
"\n",
"## Overview\n",
@@ -114,8 +114,8 @@
"will work in FSL!\n",
"\n",
"\n",
- "> `fslpython` is based on _conda_ and, in FSL 5.0.10, is Python version\n",
- "> 3.5.2. You can read more about conda [here](https://conda.io/docs/).\n",
+ "> `fslpython` is based on _conda_ and, in FSL 6.0.3, is Python version\n",
+ "> 3.7.3. You can read more about conda [here](https://conda.io/docs/).\n",
"\n",
"\n",
"<a class=\"anchor\" id=\"running-python-scripts\"></a>\n",
@@ -182,20 +182,10 @@
"and see what happens (use CTRL+D to exit).\n",
"\n",
"\n",
- "__But__ there is another interpreter called [`ipython`](https://ipython.org/)\n",
- "which is vastly superior to the standard Python interpreter. Use `ipython`\n",
- "instead! It is already installed in `fslpython`, but we just need to create a\n",
- "link to it - do this now in a terminal:\n",
- "\n",
- "\n",
- "> You might need to \"sudo\" this if your version of FSL needs admin privileges\n",
- "> to modify.\n",
- ">\n",
- "> ln -s $FSLDIR/fslpython/envs/fslpython/bin/ipython $FSLDIR/bin/fslipython\n",
- "\n",
- "\n",
- "Now if you want to do some interactive work, you can use `fslipython` in a\n",
- "terminal.\n",
+ "__But__ there is another interpreter called [IPython](https://ipython.org/)\n",
+ "which is vastly superior to the standard Python interpreter. Use IPython\n",
+ "instead! It is already installed in `fslpython`, so if you want to do some\n",
+ "interactive work, you can use `fslipython` in a terminal.\n",
"\n",
"\n",
"__Exercise__ Do it now! Start `fslipython`, then copy/paste this code into the\n",
@@ -414,24 +404,6 @@
"talks are too - you're looking at a Jupyter Notebook right now!\n",
"\n",
"\n",
- "So you're going to need to install Jupyter to get the most out of the\n",
- "practicals that we have prepared for you.\n",
- "\n",
- "\n",
- "__Exercise__ Install Jupyter into `fslpython` - run these commands in a\n",
- "terminal:\n",
- "\n",
- "\n",
- "\n",
- "> Remember to prefix with sudo if your FSL install needs admin to modify.\n",
- ">\n",
- "> $FSLDIR/fslpython/bin/conda install -n fslpython -y jupyter\n",
- "\n",
- "> And add a link so you can call it easily:\n",
- ">\n",
- "> ln -s $FSLDIR/fslpython/envs/fslpython/bin/jupyter $FSLDIR/bin/fsljupyter\n",
- "\n",
- "\n",
"<a class=\"anchor\" id=\"git\"></a>\n",
"## Git\n",
"\n",
@@ -576,16 +548,16 @@
"All of the practicals for PyTreat are hosted in a git repository at:\n",
"\n",
"\n",
- "https://git.fmrib.ox.ac.uk/fsl/pytreat-2018-practicals\n",
+ "https://git.fmrib.ox.ac.uk/fsl/pytreat-practicals-2020\n",
"\n",
"\n",
"So let's go get them!\n",
"\n",
"\n",
"> ```\n",
- "> git clone https://git.fmrib.ox.ac.uk/fsl/pytreat-2018-practicals.git\n",
- "> cd pytreat-2018-practicals\n",
- "> fsljupyter notebook\n",
+ "> git clone https://git.fmrib.ox.ac.uk/fsl/pytreat-practicals-2020.git\n",
+ "> cd pytreat-practicals-2020\n",
+ "> fslpython -m notebook\n",
"> ```"
]
}
diff --git a/talks/introduction/pytreat_intro.md b/talks/introduction/pytreat_intro.md
index 96abb80b268737b6b9617ea29a8d66c03ee8526f..da86cd6b43a394e4d7030246f7469e61c3984770 100644
--- a/talks/introduction/pytreat_intro.md
+++ b/talks/introduction/pytreat_intro.md
@@ -1,18 +1,18 @@
-# Welcome to the WIN PyTreat 2018!
+# Welcome to the WIN PyTreat 2020!
-Program: https://docs.google.com/document/d/10CwLEhUi-YiwfC2F40QCVm6eEVwKiaXkfTKz67xWAfM/edit?usp=sharing
+Program: https://docs.google.com/document/d/11LQgxC-LZPG_TXS3MP9tYXNWABAQdTI00iavk-tKttU/edit
__We need to do some setting up, so get your laptop ready!__
-__Make sure you have FSL 5.0.10 installed and working!__
+__Make sure you have FSL 6.0.3 installed and working!__
__End all sentences with an exclamation mark!__
__Open this page in your web browser!__
-https://git.fmrib.ox.ac.uk/fsl/pytreat-2018-practicals/tree/master/talks/introduction/pytreat_intro.md
+https://git.fmrib.ox.ac.uk/fsl/pytreat-practicals-2020/tree/master/talks/introduction/pytreat_intro.md
## Overview
@@ -92,8 +92,8 @@ So if you use `fslpython` for all of your development, you can be sure that it
will work in FSL!
-> `fslpython` is based on _conda_ and, in FSL 5.0.10, is Python version
-> 3.5.2. You can read more about conda [here](https://conda.io/docs/).
+> `fslpython` is based on _conda_ and, in FSL 6.0.3, is Python version
+> 3.7.3. You can read more about conda [here](https://conda.io/docs/).
<a class="anchor" id="running-python-scripts"></a>
@@ -160,20 +160,10 @@ Python has a standard interpreter built-in - run `fslpython` in a terminal,
and see what happens (use CTRL+D to exit).
-__But__ there is another interpreter called [`ipython`](https://ipython.org/)
-which is vastly superior to the standard Python interpreter. Use `ipython`
-instead! It is already installed in `fslpython`, but we just need to create a
-link to it - do this now in a terminal:
-
-
-> You might need to "sudo" this if your version of FSL needs admin privileges
-> to modify.
->
-> ln -s $FSLDIR/fslpython/envs/fslpython/bin/ipython $FSLDIR/bin/fslipython
-
-
-Now if you want to do some interactive work, you can use `fslipython` in a
-terminal.
+__But__ there is another interpreter called [IPython](https://ipython.org/)
+which is vastly superior to the standard Python interpreter. Use IPython
+instead! It is already installed in `fslpython`, so if you want to do some
+interactive work, you can use `fslipython` in a terminal.
__Exercise__ Do it now! Start `fslipython`, then copy/paste this code into the
@@ -384,24 +374,6 @@ All of the PyTreat practicals are written in a Jupyter notebook. Some of the
talks are too - you're looking at a Jupyter Notebook right now!
-So you're going to need to install Jupyter to get the most out of the
-practicals that we have prepared for you.
-
-
-__Exercise__ Install Jupyter into `fslpython` - run these commands in a
-terminal:
-
-
-
-> Remember to prefix with sudo if your FSL install needs admin to modify.
->
-> $FSLDIR/fslpython/bin/conda install -n fslpython -y jupyter
-
-> And add a link so you can call it easily:
->
-> ln -s $FSLDIR/fslpython/envs/fslpython/bin/jupyter $FSLDIR/bin/fsljupyter
-
-
<a class="anchor" id="git"></a>
## Git
@@ -538,14 +510,14 @@ git push origin master
All of the practicals for PyTreat are hosted in a git repository at:
-https://git.fmrib.ox.ac.uk/fsl/pytreat-2018-practicals
+https://git.fmrib.ox.ac.uk/fsl/pytreat-practicals-2020
So let's go get them!
> ```
-> git clone https://git.fmrib.ox.ac.uk/fsl/pytreat-2018-practicals.git
-> cd pytreat-2018-practicals
-> fsljupyter notebook
+> git clone https://git.fmrib.ox.ac.uk/fsl/pytreat-practicals-2020.git
+> cd pytreat-practicals-2020
+> fslpython -m notebook
> ```