diff --git a/README.md b/README.md index 2b3b441d985540cea2163699f6b52bc0298f1a28..003a8506907312d2adf2eaf8dced61cf8119f45a 100644 --- a/README.md +++ b/README.md @@ -44,6 +44,16 @@ jupyter: ``` +# If your FSL installation requires administrative privileges to modify, then +# you MUST run these commands as root - don't just prefix each individual +# command with sudo, or you will probably install jupyter into the wrong +# location! +# +# One further complication - once you have become root, $FSLDIR may not be set, +# so either set it as we have ione below, or make sure that it is set, before +# proceeding. +sudo su +export FSLDIR=/usr/local/fsl source $FSLDIR/fslpython/bin/activate fslpython conda install jupyter pip install notedown diff --git a/getting_started/03_file_management.ipynb b/getting_started/03_file_management.ipynb index b63ece9e98275faaec5aab4a6a366f231edf294f..d1ee18a921d8729d2131562a5a39a7bac927d3f6 100644 --- a/getting_started/03_file_management.ipynb +++ b/getting_started/03_file_management.ipynb @@ -128,7 +128,7 @@ "source": [ "For the rest of this practical, we're going to use a little data set that has\n", "been pre-generated, and is located in a sub-directory called\n", - "`file_management`." + "`03_file_management`." ] }, { @@ -137,7 +137,7 @@ "metadata": {}, "outputs": [], "source": [ - "os.chdir('file_management')" + "os.chdir('03_file_management')" ] }, {