win-pytreat merge requestshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests2024-03-06T15:13:35+00:00https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/38Add practical which introduces some third-party parallelisation libraries2024-03-06T15:13:35+00:00Paul McCarthyAdd practical which introduces some third-party parallelisation librarieshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/37Use f-string in first example2024-01-14T15:44:13+00:00Paul McCarthyUse f-string in first examplehttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/36Update use of nibabel.Nifti1Image.get_data -> get_fdata. Fix bug in fsleyes r...2023-04-27T12:53:29+01:00Paul McCarthyUpdate use of nibabel.Nifti1Image.get_data -> get_fdata. Fix bug in fsleyes render - it's --outfile / -of, not -outputFilehttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/35Adjust suggested conda install commands - explicitly install into $FSLDIR2023-04-27T08:59:21+01:00Paul McCarthyAdjust suggested conda install commands - explicitly install into $FSLDIRhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/34Use conda to install additional packages2023-04-27T08:55:59+01:00Paul McCarthyUse conda to install additional packagesSuggest using `$FSLDIR/bin/conda` instead of `pip` to install additional packagesSuggest using `$FSLDIR/bin/conda` instead of `pip` to install additional packageshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/33DOC: Minor tweak to instructions for attendees2023-01-16T16:30:16+00:00Paul McCarthyDOC: Minor tweak to instructions for attendeeshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/32ENH: Qijia+Tom's intro to programming notebook2023-01-16T15:32:07+00:00Paul McCarthyENH: Qijia+Tom's intro to programming notebookAdding the 'intro to programming' notebook by Qijia Shen and Tom Okell.
It may be worth getting rid of the numbering scheme used in the *Getting started* directory at some point, if more practicals are to be added.Adding the 'intro to programming' notebook by Qijia Shen and Tom Okell.
It may be worth getting rid of the numbering scheme used in the *Getting started* directory at some point, if more practicals are to be added.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/31check/correct typos before 2022 edition2022-04-26T15:36:07+01:00Saad Jbabdicheck/correct typos before 2022 editionhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/30tweaks to docs2022-01-20T13:13:50+00:00Sean Fitzgibbontweaks to docshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/29added WSL instructions to readme2022-01-19T09:48:32+00:00Sean Fitzgibbonadded WSL instructions to readmehttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/28Default to f-strings in 00_overview2022-01-17T20:19:58+00:00Paul McCarthyDefault to f-strings in 00_overviewhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/27update fslpy practical2022-01-14T11:47:39+00:00Paul McCarthyupdate fslpy practical- [x] Replace `fsl.utils.filetree` with `file_tree`
- [x] Make sure `fsl_sub` / `submit` usage is still valid (as we are now using `fsl.wrappers.fsl_sub`, instead of `fsl.utils.fslsub`)- [x] Replace `fsl.utils.filetree` with `file_tree`
- [x] Make sure `fsl_sub` / `submit` usage is still valid (as we are now using `fsl.wrappers.fsl_sub`, instead of `fsl.utils.fslsub`)https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/26Add scikit learn2022-01-13T20:30:24+00:00Paul McCarthyAdd scikit learnSupersedes !23Supersedes !23https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/25Updates to the pandas practical/talk2022-01-19T11:11:32+00:00Michiel Cottaarmichiel.cottaar@ndcn.ox.ac.ukUpdates to the pandas practical/talkAdditions:
- discussion of pandas types
Clarifications:
- improved explanation of why one would want to extract only numeric columns or create dummy variablesAdditions:
- discussion of pandas types
Clarifications:
- improved explanation of why one would want to extract only numeric columns or create dummy variableshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/24Ignore jupyter checkpoints2022-01-13T10:30:49+00:00Michiel Cottaarmichiel.cottaar@ndcn.ox.ac.ukIgnore jupyter checkpointshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/23Add scikit learn2022-01-13T20:30:45+00:00Sean FitzgibbonAdd scikit learnInitial pass at a `scikit-learn` talk/tutorial/practical.Initial pass at a `scikit-learn` talk/tutorial/practical.Sean FitzgibbonSean Fitzgibbonhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/22Add readmes and reorganise2022-01-10T11:43:45+00:00Saad JbabdiAdd readmes and reorganiseI've added a couple READMEs and moved the nilearn notebook to the main data_viz folder.I've added a couple READMEs and moved the nilearn notebook to the main data_viz folder.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/21Some last minute mods2021-04-30T08:23:52+01:00Sean FitzgibbonSome last minute modsAdded bokeh subdir and moved notebook into subdir
Added bokeh-server-example.pyAdded bokeh subdir and moved notebook into subdir
Added bokeh-server-example.pyhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/20bokeh2021-04-29T08:55:57+01:00Sean Fitzgibbonbokehnotebook for demonstrating bokeh examples during the lecture. They are not my examples I just pulled them together from the bokeh documentation into a single notebook for easy demonstration. It is really just meant to be a bokeh taster. ...notebook for demonstrating bokeh examples during the lecture. They are not my examples I just pulled them together from the bokeh documentation into a single notebook for easy demonstration. It is really just meant to be a bokeh taster. NOT a practical. I have explained that at the top of the notebook. However, thought the students might still like access to this for future reference, and we might build it out into a bokeh practical in the future. Let me know if you think it should be merged.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/19Plotly examples2021-04-29T08:35:53+01:00Sean FitzgibbonPlotly examplesThis is a notebook I created for demonstrating Plotly examples during the lecture. They are not my examples I just pulled them together from the Plotly documentation into a single notebook for easy demonstration. It is really just mean...This is a notebook I created for demonstrating Plotly examples during the lecture. They are not my examples I just pulled them together from the Plotly documentation into a single notebook for easy demonstration. It is really just meant to be a Plotly taster. I have explained that at the top of the notebook. I thought the students might still like access to this for future reference.