win-pytreat merge requestshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests2021-04-28T21:45:37+01:00https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/18Added install instructions for nilearn2021-04-28T21:45:37+01:00Sean FitzgibbonAdded install instructions for nilearnhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/29added WSL instructions to readme2022-01-19T09:48:32+00:00Sean Fitzgibbonadded WSL instructions to readmehttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/38Add practical which introduces some third-party parallelisation libraries2024-03-06T15:13:35+00:00Paul McCarthyAdd practical which introduces some third-party parallelisation librarieshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/22Add readmes and reorganise2022-01-10T11:43:45+00:00Saad JbabdiAdd readmes and reorganiseI've added a couple READMEs and moved the nilearn notebook to the main data_viz folder.I've added a couple READMEs and moved the nilearn notebook to the main data_viz folder.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/26Add scikit learn2022-01-13T20:30:24+00:00Paul McCarthyAdd scikit learnSupersedes !23Supersedes !23https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/23Add scikit learn2022-01-13T20:30:45+00:00Sean FitzgibbonAdd scikit learnInitial pass at a `scikit-learn` talk/tutorial/practical.Initial pass at a `scikit-learn` talk/tutorial/practical.Sean FitzgibbonSean Fitzgibbonhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/35Adjust suggested conda install commands - explicitly install into $FSLDIR2023-04-27T08:59:21+01:00Paul McCarthyAdjust suggested conda install commands - explicitly install into $FSLDIRhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/8Avoiding weird error when using custom mad2021-01-19T17:15:25+00:00Michiel Cottaarmichiel.cottaar@ndcn.ox.ac.ukAvoiding weird error when using custom madSneakily switching to builtin one, where mine does not work...Sneakily switching to builtin one, where mine does not work...https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/20bokeh2021-04-29T08:55:57+01:00Sean Fitzgibbonbokehnotebook for demonstrating bokeh examples during the lecture. They are not my examples I just pulled them together from the bokeh documentation into a single notebook for easy demonstration. It is really just meant to be a bokeh taster. ...notebook for demonstrating bokeh examples during the lecture. They are not my examples I just pulled them together from the bokeh documentation into a single notebook for easy demonstration. It is really just meant to be a bokeh taster. NOT a practical. I have explained that at the top of the notebook. However, thought the students might still like access to this for future reference, and we might build it out into a bokeh practical in the future. Let me know if you think it should be merged.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/31check/correct typos before 2022 edition2022-04-26T15:36:07+01:00Saad Jbabdicheck/correct typos before 2022 editionhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/28Default to f-strings in 00_overview2022-01-17T20:19:58+00:00Paul McCarthyDefault to f-strings in 00_overviewhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/4DOC: Change "For attendees" to "Instructions for attendees", to make it a bit...2021-01-14T13:33:22+00:00Paul McCarthyDOC: Change "For attendees" to "Instructions for attendees", to make it a bit more obvioushttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/33DOC: Minor tweak to instructions for attendees2023-01-16T16:30:16+00:00Paul McCarthyDOC: Minor tweak to instructions for attendeeshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/32ENH: Qijia+Tom's intro to programming notebook2023-01-16T15:32:07+00:00Paul McCarthyENH: Qijia+Tom's intro to programming notebookAdding the 'intro to programming' notebook by Qijia Shen and Tom Okell.
It may be worth getting rid of the numbering scheme used in the *Getting started* directory at some point, if more practicals are to be added.Adding the 'intro to programming' notebook by Qijia Shen and Tom Okell.
It may be worth getting rid of the numbering scheme used in the *Getting started* directory at some point, if more practicals are to be added.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/12fsleyes tutorial2021-04-27T09:33:55+01:00Saad Jbabdifsleyes tutorialI've added the fsleyes tutorial.I've added the fsleyes tutorial.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/5Generify matlab vs python2021-01-18T12:29:46+00:00Sean FitzgibbonGenerify matlab vs pythonThe goal of this merge is to make the `matlab_vs_python` demos stand alone and self paced by adding some `README.md` files that give an overview of the demos and some instructions about what dependencies are required.The goal of this merge is to make the `matlab_vs_python` demos stand alone and self paced by adding some `README.md` files that give an overview of the demos and some instructions about what dependencies are required.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/6GLM and PCA tutorials2021-01-16T10:08:39+00:00Mo ShahdlooGLM and PCA tutorialsThe GLM and PCA tutorials were taken from Saad's website. The two tutorials are separated, and formatted into Jupyter Notebook format. Plus, some aesthetic cleanups.The GLM and PCA tutorials were taken from Saad's website. The two tutorials are separated, and formatted into Jupyter Notebook format. Plus, some aesthetic cleanups.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/24Ignore jupyter checkpoints2022-01-13T10:30:49+00:00Michiel Cottaarmichiel.cottaar@ndcn.ox.ac.ukIgnore jupyter checkpointshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/11Matplotlib talk/practical2021-04-28T15:51:03+01:00Michiel Cottaarmichiel.cottaar@ndcn.ox.ac.ukMatplotlib talk/practicalWhile creating my talk I ended up creating a more extended matplotlib practical...
I put it separately from the 06-plotting.ipynb as I think that still provides a friendlier initial look at plotting in python, while this is a more in de...While creating my talk I ended up creating a more extended matplotlib practical...
I put it separately from the 06-plotting.ipynb as I think that still provides a friendlier initial look at plotting in python, while this is a more in depth dive into various features.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/14Mo fixed a few typos in commands.2021-04-27T09:34:29+01:00Saad JbabdiMo fixed a few typos in commands.and also increased the delay in the convert commands from 1 to 5 to be slowerand also increased the delay in the convert commands from 1 to 5 to be slower