win-pytreat merge requestshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests2021-01-13T11:27:55+00:00https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/1RF: Widespread refactorings2021-01-13T11:27:55+00:00Paul McCarthyRF: Widespread refactoringsWith the aim of making the fsl/win-pytreatxrepository independent of any specific pytreat.
Pandas talk migrated to applications/pandas/.
fslpy practical migrated to applications/fsply/.
Python introduction talk migrated to getting_sta...With the aim of making the fsl/win-pytreatxrepository independent of any specific pytreat.
Pandas talk migrated to applications/pandas/.
fslpy practical migrated to applications/fsply/.
Python introduction talk migrated to getting_started/00_overviewhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/2Pandas cleanup2021-01-13T15:19:40+00:00Michiel Cottaarmichiel.cottaar@ndcn.ox.ac.ukPandas cleanupI went through the pandas practical/talk again to clean it up.I went through the pandas practical/talk again to clean it up.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/3Various updates2021-01-13T18:47:16+00:00Paul McCarthyVarious updatesVarious updates to all practicalsVarious updates to all practicalshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/4DOC: Change "For attendees" to "Instructions for attendees", to make it a bit...2021-01-14T13:33:22+00:00Paul McCarthyDOC: Change "For attendees" to "Instructions for attendees", to make it a bit more obvioushttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/6GLM and PCA tutorials2021-01-16T10:08:39+00:00Mo ShahdlooGLM and PCA tutorialsThe GLM and PCA tutorials were taken from Saad's website. The two tutorials are separated, and formatted into Jupyter Notebook format. Plus, some aesthetic cleanups.The GLM and PCA tutorials were taken from Saad's website. The two tutorials are separated, and formatted into Jupyter Notebook format. Plus, some aesthetic cleanups.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/7test2021-01-18T12:29:36+00:00Paul McCarthytestchecking to see if i can rebase in the gitlab UI. See !5checking to see if i can rebase in the gitlab UI. See !5https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/5Generify matlab vs python2021-01-18T12:29:46+00:00Sean FitzgibbonGenerify matlab vs pythonThe goal of this merge is to make the `matlab_vs_python` demos stand alone and self paced by adding some `README.md` files that give an overview of the demos and some instructions about what dependencies are required.The goal of this merge is to make the `matlab_vs_python` demos stand alone and self paced by adding some `README.md` files that give an overview of the demos and some instructions about what dependencies are required.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/8Avoiding weird error when using custom mad2021-01-19T17:15:25+00:00Michiel Cottaarmichiel.cottaar@ndcn.ox.ac.ukAvoiding weird error when using custom madSneakily switching to builtin one, where mine does not work...Sneakily switching to builtin one, where mine does not work...https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/9RF: Tiny formatting fixes2021-01-19T22:03:01+00:00Paul McCarthyRF: Tiny formatting fixeshttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/10RF: fix render for macOS2021-01-20T09:40:38+00:00Paul McCarthyRF: fix render for macOShttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/12fsleyes tutorial2021-04-27T09:33:55+01:00Saad Jbabdifsleyes tutorialI've added the fsleyes tutorial.I've added the fsleyes tutorial.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/14Mo fixed a few typos in commands.2021-04-27T09:34:29+01:00Saad JbabdiMo fixed a few typos in commands.and also increased the delay in the convert commands from 1 to 5 to be slowerand also increased the delay in the convert commands from 1 to 5 to be slowerhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/11Matplotlib talk/practical2021-04-28T15:51:03+01:00Michiel Cottaarmichiel.cottaar@ndcn.ox.ac.ukMatplotlib talk/practicalWhile creating my talk I ended up creating a more extended matplotlib practical...
I put it separately from the 06-plotting.ipynb as I think that still provides a friendlier initial look at plotting in python, while this is a more in de...While creating my talk I ended up creating a more extended matplotlib practical...
I put it separately from the 06-plotting.ipynb as I think that still provides a friendlier initial look at plotting in python, while this is a more in depth dive into various features.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/13seaborn tutorial2021-04-28T20:33:39+01:00Mo Shahdlooseaborn tutorialFeedbacks welcome.Feedbacks welcome.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/15Move fsleyes2021-04-28T20:37:08+01:00Michiel Cottaarmichiel.cottaar@ndcn.ox.ac.ukMove fsleyesMoves fsleyes paractical into data_visualisation directoryMoves fsleyes paractical into data_visualisation directoryhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/16Nilearn2021-04-28T20:38:36+01:00Sean FitzgibbonNilearnThis branch contains a new practical for nilearn plottingThis branch contains a new practical for nilearn plottinghttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/17Move nilearn into data viz directory2021-04-28T20:56:18+01:00Paul McCarthyMove nilearn into data viz directoryPaul McCarthyPaul McCarthyhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/18Added install instructions for nilearn2021-04-28T21:45:37+01:00Sean FitzgibbonAdded install instructions for nilearnhttps://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/19Plotly examples2021-04-29T08:35:53+01:00Sean FitzgibbonPlotly examplesThis is a notebook I created for demonstrating Plotly examples during the lecture. They are not my examples I just pulled them together from the Plotly documentation into a single notebook for easy demonstration. It is really just mean...This is a notebook I created for demonstrating Plotly examples during the lecture. They are not my examples I just pulled them together from the Plotly documentation into a single notebook for easy demonstration. It is really just meant to be a Plotly taster. I have explained that at the top of the notebook. I thought the students might still like access to this for future reference.https://git.fmrib.ox.ac.uk/fsl/win-pytreat/-/merge_requests/20bokeh2021-04-29T08:55:57+01:00Sean Fitzgibbonbokehnotebook for demonstrating bokeh examples during the lecture. They are not my examples I just pulled them together from the bokeh documentation into a single notebook for easy demonstration. It is really just meant to be a bokeh taster. ...notebook for demonstrating bokeh examples during the lecture. They are not my examples I just pulled them together from the bokeh documentation into a single notebook for easy demonstration. It is really just meant to be a bokeh taster. NOT a practical. I have explained that at the top of the notebook. However, thought the students might still like access to this for future reference, and we might build it out into a bokeh practical in the future. Let me know if you think it should be merged.