From fde31d70833e05f816350dec6431192bc7fae8a0 Mon Sep 17 00:00:00 2001 From: Paul McCarthy Date: Wed, 28 Apr 2021 20:54:34 +0100 Subject: [PATCH 1/2] Move nilearn prac into data_viz, remove .ipynb cruft --- .../data/.ipynb_checkpoints/cmd-checkpoint.txt | 1 - applications/{ => data_visualisation}/nilearn/nilearn.ipynb | 0 2 files changed, 1 deletion(-) delete mode 100644 applications/data_visualisation/data/.ipynb_checkpoints/cmd-checkpoint.txt rename applications/{ => data_visualisation}/nilearn/nilearn.ipynb (100%) diff --git a/applications/data_visualisation/data/.ipynb_checkpoints/cmd-checkpoint.txt b/applications/data_visualisation/data/.ipynb_checkpoints/cmd-checkpoint.txt deleted file mode 100644 index 239d92d..0000000 --- a/applications/data_visualisation/data/.ipynb_checkpoints/cmd-checkpoint.txt +++ /dev/null @@ -1 +0,0 @@ ---scene 3d --worldLoc 9.918212890625e-05 -18.000099182128906 17.999900817871094 --displaySpace world --cameraRotation -60.10 177.44 -1.96 --zoom 75.0 --hideLegend --lightPos 181.9999008178711 199.99970245361328 17.999900817871094 --offset 0.0 0.0 --hideCursor --bgColour 0.6 0.6 0.753 --fgColour 0.0 1.0 0.0 --cursorColour 0.0 1.0 0.0 --colourBarLocation top --colourBarLabelSide top-left --colourBarSize 100.0 --labelSize 12 --performance 3 --movieSync /usr/local/fsl/data/standard/MNI152_T1_2mm.nii.gz --name "MNI152_T1_2mm" --overlayType volume --alpha 100.0 --brightness 59.98929424740918 --contrast 80.01069122355028 --cmap yellow --negativeCmap greyscale --clipPlane 50.000 5.883 $angle1 --clipPlane 50.000 -2.917 $angle2 --displayRange 1000.0 4985.0685976730165 --clippingRange 1000.0 10067.68 --modulateRange 0.0 9968.0 --gamma 0.0 --cmapResolution 256 --interpolation none --numSteps 100 --blendFactor 0.1 --smoothing 0 --resolution 100 --numInnerSteps 10 --clipMode intersection --volume 0 diff --git a/applications/nilearn/nilearn.ipynb b/applications/data_visualisation/nilearn/nilearn.ipynb similarity index 100% rename from applications/nilearn/nilearn.ipynb rename to applications/data_visualisation/nilearn/nilearn.ipynb -- GitLab From 38430dea9b77f7476752b28da3781fa14beb8c57 Mon Sep 17 00:00:00 2001 From: Paul McCarthy Date: Wed, 28 Apr 2021 20:54:57 +0100 Subject: [PATCH 2/2] Readme --- README.md | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 887a651..34f6b68 100644 --- a/README.md +++ b/README.md @@ -14,7 +14,8 @@ contains the following: more about the language. - The `applications` directory contains a series of practicals which focus - on using Python to accomplish specific tasks. + on using Python to accomplish specific tasks, and practicals which introduce + a range of useful Python-based libraries. The practicals have been written under the assumption that FSL 6.0.4 is installed. @@ -36,7 +37,9 @@ A page should open in your web browser - to access the practicals, navigate into one of the `getting_started`, `advanced_programming`, or `applications` directories, and click on the `.ipynb` file you are interested in. -Some practical sub-directories will also contain a `README.md` file with additional information specific to the practical. Make sure you read this as well **before running the notebooks**. +Some practical sub-directories will also contain a `README.md` file with +additional information specific to the practical. Make sure you read this as +well **before running the notebooks**. Have fun! -- GitLab