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Commit 20c0a21b authored by Stamatios Sotiropoulos's avatar Stamatios Sotiropoulos
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Merge branch 'patch1' into 'master' 

Correct bug in requesting time when a GPU queue is used

See merge request !1
parents 40994d42 fea079b5
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...@@ -336,7 +336,7 @@ if [ "x$SGE_ROOT" != "x" ]; then # Submit all commands to run in parallel on th ...@@ -336,7 +336,7 @@ if [ "x$SGE_ROOT" != "x" ]; then # Submit all commands to run in parallel on th
if [ $gpu -eq 0 ];then if [ $gpu -eq 0 ];then
fsl_sub -q long.q -l $out/logs -N xtract -t $commands fsl_sub -q long.q -l $out/logs -N xtract -t $commands
else else
fsl_sub -q $FSLGECUDAQ -l $out/logs -N xtract $commands fsl_sub -q $FSLGECUDAQ -T 300 -l $out/logs -N xtract $commands
#Submission call for the WashU GPU cluster #Submission call for the WashU GPU cluster
#qsub -l nodes=1:ppn=1:gpus=1:K20x,walltime=04:00:00,mem=8gb -N autoPtx_GPU -e $out/logs/GPUerrofile -o $out/logs/GPUoutfile $commands #qsub -l nodes=1:ppn=1:gpus=1:K20x,walltime=04:00:00,mem=8gb -N autoPtx_GPU -e $out/logs/GPUerrofile -o $out/logs/GPUoutfile $commands
fi fi
......
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