Commit 40994d42 authored by Saad Jbabdi's avatar Saad Jbabdi
Browse files

small typoos

parent 4e270f0a
...@@ -4,7 +4,7 @@ ...@@ -4,7 +4,7 @@
XTRACT can be used to automatically extract a set of carefully dissected tracts in humans and macaques (other XTRACT can be used to automatically extract a set of carefully dissected tracts in humans and macaques (other
species to come). It can also be used to define one's own tractography protocols where all the user needs to do is to species to come). It can also be used to define one's own tractography protocols where all the user needs to do is to
define a set of masks in standard space (e.g. MNI) define a set of masks in standard space (e.g. MNI152)
The script was written by Saad Jbabdi & Stamatios Sotiropoulos The script was written by Saad Jbabdi & Stamatios Sotiropoulos
(based on the autoPtx tool by Marius de Groot - see https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/AutoPtx) (based on the autoPtx tool by Marius de Groot - see https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/AutoPtx)
...@@ -16,6 +16,7 @@ Rogier Mars & Stamatios Sotiropoulos ...@@ -16,6 +16,7 @@ Rogier Mars & Stamatios Sotiropoulos
with help from: with help from:
Saad Jbabdi, Kathryn Bryant, Shaun Warrington, Marina Charquero-Ballester, Gwenaelle Douaud Saad Jbabdi, Kathryn Bryant, Shaun Warrington, Marina Charquero-Ballester, Gwenaelle Douaud
The XTRACT viewer helper script was written by Shaun Warrington
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...@@ -69,7 +70,7 @@ Usage: ...@@ -69,7 +70,7 @@ Usage:
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## Running XTRACT: ## Running XTRACT:
XTRACT automatically detects if $SGE_ROOT is set and if so uses FSL_SUB XTRACT automatically detects if $SGE_ROOT is set and if so uses FSL_SUB.
For optimal performance, use the GPU version!!!! For optimal performance, use the GPU version!!!!
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...@@ -80,8 +81,7 @@ Usage: ...@@ -80,8 +81,7 @@ Usage:
- For MACAQUE, XTRACT uses the F99 atlas in Caret - see http://brainvis.wustl.edu/wiki/index.php/Caret:Atlases - For MACAQUE, XTRACT uses the F99 atlas in Caret - see http://brainvis.wustl.edu/wiki/index.php/Caret:Atlases
We also provide a copy of the F99 atlas in $FSLDIR/etc/xtract_data/standard/F99 We also provide a copy of the F99 atlas in $FSLDIR/etc/xtract_data/standard/F99. This includes a helper script for registering your own diffusion/structural data to the F99 altas
This includes a helper script for registering your own diffusion/structural data to the F99 altas
When running XTRACT with the '-species' option, a predefined list of tracts is automatically extracted. Currently the following tracts are available: When running XTRACT with the '-species' option, a predefined list of tracts is automatically extracted. Currently the following tracts are available:
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