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FSL
xtract
Commits
6106483f
Commit
6106483f
authored
Aug 19, 2019
by
Saad Jbabdi
Browse files
changed path to data
parent
3cb4d320
Changes
1
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xtract
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6106483f
...
...
@@ -15,8 +15,6 @@ ptxbin_gpu=$FSLDIR/bin/probtrackx2_gpu
# Location of xtract data
datadir
=
$FSLDIR
/etc/xtract_data
# tmp dir for testing
datadir
=
/vols/Scratch/saad/xtract_data
Usage
()
{
cat
<<
EOF
...
...
@@ -310,9 +308,9 @@ chmod +x $commands
if
[
"x
$SGE_ROOT
"
!=
"x"
]
;
then
# Submit all commands to run in parallel on the cluster
# One job per tract for a CPU cluster, one job for all tracts for a GPU cluster.
if
[
$gpu
-eq
0
]
;
then
fsl_sub
-q
long.q
-l
$out
/logs
-N
fsl_autoPtx
-t
$commands
fsl_sub
-q
long.q
-l
$out
/logs
-N
xtract
-t
$commands
else
fsl_sub
-q
$FSLGECUDAQ
-l
$out
/logs
-N
fsl_autoPtx
$commands
fsl_sub
-q
$FSLGECUDAQ
-l
$out
/logs
-N
xtract
$commands
#Submission call for the WashU GPU cluster
#qsub -l nodes=1:ppn=1:gpus=1:K20x,walltime=04:00:00,mem=8gb -N autoPtx_GPU -e $out/logs/GPUerrofile -o $out/logs/GPUoutfile $commands
fi
...
...
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