Commit 6106483f authored by Saad Jbabdi's avatar Saad Jbabdi
Browse files

changed path to data

parent 3cb4d320
...@@ -15,8 +15,6 @@ ptxbin_gpu=$FSLDIR/bin/probtrackx2_gpu ...@@ -15,8 +15,6 @@ ptxbin_gpu=$FSLDIR/bin/probtrackx2_gpu
# Location of xtract data # Location of xtract data
datadir=$FSLDIR/etc/xtract_data datadir=$FSLDIR/etc/xtract_data
# tmp dir for testing
datadir=/vols/Scratch/saad/xtract_data
Usage() { Usage() {
cat << EOF cat << EOF
...@@ -310,9 +308,9 @@ chmod +x $commands ...@@ -310,9 +308,9 @@ chmod +x $commands
if [ "x$SGE_ROOT" != "x" ]; then # Submit all commands to run in parallel on the cluster if [ "x$SGE_ROOT" != "x" ]; then # Submit all commands to run in parallel on the cluster
# One job per tract for a CPU cluster, one job for all tracts for a GPU cluster. # One job per tract for a CPU cluster, one job for all tracts for a GPU cluster.
if [ $gpu -eq 0 ];then if [ $gpu -eq 0 ];then
fsl_sub -q long.q -l $out/logs -N fsl_autoPtx -t $commands fsl_sub -q long.q -l $out/logs -N xtract -t $commands
else else
fsl_sub -q $FSLGECUDAQ -l $out/logs -N fsl_autoPtx $commands fsl_sub -q $FSLGECUDAQ -l $out/logs -N xtract $commands
#Submission call for the WashU GPU cluster #Submission call for the WashU GPU cluster
#qsub -l nodes=1:ppn=1:gpus=1:K20x,walltime=04:00:00,mem=8gb -N autoPtx_GPU -e $out/logs/GPUerrofile -o $out/logs/GPUoutfile $commands #qsub -l nodes=1:ppn=1:gpus=1:K20x,walltime=04:00:00,mem=8gb -N autoPtx_GPU -e $out/logs/GPUerrofile -o $out/logs/GPUoutfile $commands
fi fi
......
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